KEGG   Pseudomonas kribbensis: DLD99_11110
Entry
DLD99_11110       CDS       T06348                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pke  Pseudomonas kribbensis
Pathway
pke03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pke00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DLD99_11110 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pke03400]
    DLD99_11110 (ligD)
Enzymes [BR:pke01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DLD99_11110 (ligD)
DNA repair and recombination proteins [BR:pke03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DLD99_11110 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase Myosin_N
Other DBs
NCBI-ProteinID: AXI60997
UniProt: A0A345RNY1
LinkDB
Position
2401553..2404090
AA seq 845 aa
MNRNLDDYNRMRDFSATSEPAAVKRRGKKAGADHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGHIPEGHYGAGDVIVWDRGVWIPLEDP
QKAYAKGKLKFELQGEKLGGVWNLVRTHMPGKQEQWFLIKHQDAAARPQSDYDVLVAEPD
SVLSERTLVDKPKLDARQVKPLKQPARKPASGKLVGAHKARIPAQLKPQLATLVDSAPAG
DWSYEIKFDGYRIMARIDHDDVQLFTRNGHDWTHKLPEQAQALAALGLESAWLDGEVVVT
NENGIPDFQALQNAFDDSRSSDILYYLFDLPYLNGVDLREVPVEERRAALATILKAHKSP
LLRFSEAFDETPEALLNSACQMQMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVIVGY
TDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFNEATLKTVLARLKPLRAKKTALANP
PVGFEAKGVHWLKPNLLAEVAFAEMTREGSVRHAVFHGLRDDKPARDITEERAKPMKTSK
AQATAPSQAGLADGKVRITHPDRVIDASSGTTKMQLAEYYASVAEWILPQLKDRPVALVR
APDGIAGELFFQKNAEHLAIPGIRTLDKELTGQPMMLINNAESLIGAVQMSTVELHTWNA
TTADLEKPDRFVLDLDPDPALPWKSMVEATALTLTVLEELGLRAFLKTSGGKGIHLVVPL
IRKHGWDEVKDFSHAIVSHMAKQLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAA
RTREGLPVSVPLFVDEVKAIKGGNQWNIHNVHERLADVGDEPWADMKKTRQSITVEMRKR
VGLKT
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgaacaggaacctcgacgactacaaccgcatgcgcgacttctcggcgacctcggaaccg
gcggcggtcaagcgtcggggcaagaaggctggcgccgatcacgcgctgcagttctgcatc
cagaagcatgacgcctcgcacctgcattacgactttcgcctggagctggacggcgcactc
aagagctgggcggtgcccaagggcccgtcgctggatcccaaggtcaagcgcctggcggtg
catgtcgaagaccacccgctggattacgccaccttcgaagggcacatccccgaggggcat
tacggtgcaggagacgtcatcgtctgggatcgcggcgtgtggattccgctggaggatccg
caaaaggcctatgccaaaggcaagctcaagttcgagctgcagggcgagaagctcggcggg
gtgtggaatctggtgcgcacccacatgccgggcaagcaggaacaatggtttctgatcaag
catcaggacgccgccgcccggccgcaaagcgattacgacgtgctggtcgccgagccggac
agcgtgctcagcgaacgcaccctcgtcgacaaaccgaagctcgacgcccggcaggtcaaa
ccgctgaaacagcccgcgcgcaaacccgcctcgggcaagcttgtcggtgcacacaaggcg
cgaattcccgcccagttgaaaccgcaattggccacgctggtggacagtgctccggcaggg
gactggagctacgaaatcaaattcgatggctaccggatcatggcgcgcatcgatcatgac
gacgtgcagttgttcacccgtaacggccatgactggacccacaaactgcccgagcaggcc
caggcactcgcagcgctggggctggagtcggcgtggcttgacggtgaagtggtggtcacc
aacgaaaacggcattccggactttcaggcgctgcagaacgccttcgacgacagccgcagc
agcgacatcctttattacctgttcgacctgccttacctcaacggtgtcgacctgcgcgaa
gtcccggtggaagagcggcgcgcagcgctggccacgatattgaaggcgcacaagagtccg
ttgctgcgtttctccgaagccttcgacgaaaccccggaggccttgctcaacagcgcctgc
cagatgcagatggaagggttgatcggcaaacgtctcggctcgccctatgtgtcgcggcgc
agcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtgatcgtcggttac
accgatccgaagggttcgcgcagtgcctttggtgctttgttgctgggcctgcacgatcgc
gacagcggcgagttgcgttatgccggcaaggtcggaacgggcttcaacgaggccaccctg
aaaacagtgcttgcccggctcaaaccgttgcgggcgaaaaagactgcgctggccaacccg
cccgttggtttcgaggccaagggtgtgcactggctcaagccgaacctgctggcggaggtg
gcgtttgccgaaatgacccgggagggttcggttcgccacgccgtgttccatggtctgcgc
gatgacaaaccggccagggacatcaccgaggagcgcgccaaacccatgaagacctcaaag
gctcaagctaccgcgccgtcccaagccggcctggccgacggaaaggtgcggatcactcac
ccggaccgggtcatcgacgccagcagcggcaccaccaagatgcaactggccgagtattac
gccagcgtcgccgaatggatcctgccgcagctcaaggatcggcccgtggcgctggtgcgg
gccccggacggcatcgctggcgaactgttctttcaaaaaaacgccgaacacctggcgatc
cccggcatccgcacgctggacaaggaactgaccggccaaccgatgatgctgatcaacaac
gccgagtcgctgattggggcggtgcagatgagcaccgtcgaactgcacacctggaacgcc
accacggcggatctggaaaaacccgaccgcttcgttctcgatctggacccggatccggcg
ctgccctggaaaagcatggtcgaagccaccgccctgaccctgaccgtgctggaggaactc
ggtttgcgggcattcctcaagaccagcggcggcaagggcattcatctggtggtgccgctg
atccgcaagcatggttgggatgaggtcaaggatttcagccatgcgatcgtcagtcacatg
gccaaacagttgccggagcggttttccgcggtgtccggaccgaagaaccgcgtggggcgg
atcttcattgattacctgcgcaacgggctcggcgccaccacgatttgtgcttacgcggcg
cggacccgcgaagggctgccggtgtcggtgccgttgtttgtcgatgaagtgaaggcgatc
aagggcggcaatcagtggaatattcataacgtccacgaacgtctggcggacgtcggcgat
gaaccctgggcggacatgaagaaaacccgccagagcattaccgtcgagatgcgcaaacgg
gtcggcctgaaaacgtga

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