Pseudomonas kribbensis: DLD99_11110
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Entry
DLD99_11110 CDS
T06348
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pke
Pseudomonas kribbensis
Pathway
pke03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DLD99_11110 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pke03400
]
DLD99_11110 (ligD)
Enzymes [BR:
pke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DLD99_11110 (ligD)
DNA repair and recombination proteins [BR:
pke03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DLD99_11110 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AXI60997
UniProt:
A0A345RNY1
LinkDB
All DBs
Position
2401553..2404090
Genome browser
AA seq
845 aa
AA seq
DB search
MNRNLDDYNRMRDFSATSEPAAVKRRGKKAGADHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGHIPEGHYGAGDVIVWDRGVWIPLEDP
QKAYAKGKLKFELQGEKLGGVWNLVRTHMPGKQEQWFLIKHQDAAARPQSDYDVLVAEPD
SVLSERTLVDKPKLDARQVKPLKQPARKPASGKLVGAHKARIPAQLKPQLATLVDSAPAG
DWSYEIKFDGYRIMARIDHDDVQLFTRNGHDWTHKLPEQAQALAALGLESAWLDGEVVVT
NENGIPDFQALQNAFDDSRSSDILYYLFDLPYLNGVDLREVPVEERRAALATILKAHKSP
LLRFSEAFDETPEALLNSACQMQMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVIVGY
TDPKGSRSAFGALLLGLHDRDSGELRYAGKVGTGFNEATLKTVLARLKPLRAKKTALANP
PVGFEAKGVHWLKPNLLAEVAFAEMTREGSVRHAVFHGLRDDKPARDITEERAKPMKTSK
AQATAPSQAGLADGKVRITHPDRVIDASSGTTKMQLAEYYASVAEWILPQLKDRPVALVR
APDGIAGELFFQKNAEHLAIPGIRTLDKELTGQPMMLINNAESLIGAVQMSTVELHTWNA
TTADLEKPDRFVLDLDPDPALPWKSMVEATALTLTVLEELGLRAFLKTSGGKGIHLVVPL
IRKHGWDEVKDFSHAIVSHMAKQLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAA
RTREGLPVSVPLFVDEVKAIKGGNQWNIHNVHERLADVGDEPWADMKKTRQSITVEMRKR
VGLKT
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgactacaaccgcatgcgcgacttctcggcgacctcggaaccg
gcggcggtcaagcgtcggggcaagaaggctggcgccgatcacgcgctgcagttctgcatc
cagaagcatgacgcctcgcacctgcattacgactttcgcctggagctggacggcgcactc
aagagctgggcggtgcccaagggcccgtcgctggatcccaaggtcaagcgcctggcggtg
catgtcgaagaccacccgctggattacgccaccttcgaagggcacatccccgaggggcat
tacggtgcaggagacgtcatcgtctgggatcgcggcgtgtggattccgctggaggatccg
caaaaggcctatgccaaaggcaagctcaagttcgagctgcagggcgagaagctcggcggg
gtgtggaatctggtgcgcacccacatgccgggcaagcaggaacaatggtttctgatcaag
catcaggacgccgccgcccggccgcaaagcgattacgacgtgctggtcgccgagccggac
agcgtgctcagcgaacgcaccctcgtcgacaaaccgaagctcgacgcccggcaggtcaaa
ccgctgaaacagcccgcgcgcaaacccgcctcgggcaagcttgtcggtgcacacaaggcg
cgaattcccgcccagttgaaaccgcaattggccacgctggtggacagtgctccggcaggg
gactggagctacgaaatcaaattcgatggctaccggatcatggcgcgcatcgatcatgac
gacgtgcagttgttcacccgtaacggccatgactggacccacaaactgcccgagcaggcc
caggcactcgcagcgctggggctggagtcggcgtggcttgacggtgaagtggtggtcacc
aacgaaaacggcattccggactttcaggcgctgcagaacgccttcgacgacagccgcagc
agcgacatcctttattacctgttcgacctgccttacctcaacggtgtcgacctgcgcgaa
gtcccggtggaagagcggcgcgcagcgctggccacgatattgaaggcgcacaagagtccg
ttgctgcgtttctccgaagccttcgacgaaaccccggaggccttgctcaacagcgcctgc
cagatgcagatggaagggttgatcggcaaacgtctcggctcgccctatgtgtcgcggcgc
agcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtgatcgtcggttac
accgatccgaagggttcgcgcagtgcctttggtgctttgttgctgggcctgcacgatcgc
gacagcggcgagttgcgttatgccggcaaggtcggaacgggcttcaacgaggccaccctg
aaaacagtgcttgcccggctcaaaccgttgcgggcgaaaaagactgcgctggccaacccg
cccgttggtttcgaggccaagggtgtgcactggctcaagccgaacctgctggcggaggtg
gcgtttgccgaaatgacccgggagggttcggttcgccacgccgtgttccatggtctgcgc
gatgacaaaccggccagggacatcaccgaggagcgcgccaaacccatgaagacctcaaag
gctcaagctaccgcgccgtcccaagccggcctggccgacggaaaggtgcggatcactcac
ccggaccgggtcatcgacgccagcagcggcaccaccaagatgcaactggccgagtattac
gccagcgtcgccgaatggatcctgccgcagctcaaggatcggcccgtggcgctggtgcgg
gccccggacggcatcgctggcgaactgttctttcaaaaaaacgccgaacacctggcgatc
cccggcatccgcacgctggacaaggaactgaccggccaaccgatgatgctgatcaacaac
gccgagtcgctgattggggcggtgcagatgagcaccgtcgaactgcacacctggaacgcc
accacggcggatctggaaaaacccgaccgcttcgttctcgatctggacccggatccggcg
ctgccctggaaaagcatggtcgaagccaccgccctgaccctgaccgtgctggaggaactc
ggtttgcgggcattcctcaagaccagcggcggcaagggcattcatctggtggtgccgctg
atccgcaagcatggttgggatgaggtcaaggatttcagccatgcgatcgtcagtcacatg
gccaaacagttgccggagcggttttccgcggtgtccggaccgaagaaccgcgtggggcgg
atcttcattgattacctgcgcaacgggctcggcgccaccacgatttgtgcttacgcggcg
cggacccgcgaagggctgccggtgtcggtgccgttgtttgtcgatgaagtgaaggcgatc
aagggcggcaatcagtggaatattcataacgtccacgaacgtctggcggacgtcggcgat
gaaccctgggcggacatgaagaaaacccgccagagcattaccgtcgagatgcgcaaacgg
gtcggcctgaaaacgtga
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