Pseudomonas kribbensis: DLD99_19310
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Entry
DLD99_19310 CDS
T06348
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pke
Pseudomonas kribbensis
Pathway
pke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DLD99_19310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pke03400
]
DLD99_19310
Enzymes [BR:
pke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DLD99_19310
DNA repair and recombination proteins [BR:
pke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DLD99_19310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXI62536
UniProt:
A0A345RTC0
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All DBs
Position
4244630..4248079
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLDRLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAELAEGNIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKTV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctccccggtgccgccctgagcctggcgattgccgaggctgccagcgctgccaagcgcttc
acgttactgctgaccgccgacagccagagtgccgaacggctggagcaggagctgagcttc
ttcgccccggatttgccggtgctgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctttatagactgccggag
ctggagcatggcgtgctggtggtgccgatcaccaccgccctgcatcgcctggcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggtcagaagctcgacgtcgagcaa
atgcgctcgcggctcgaagccagcggctatcgctacgtcgatacggtttacgaacacggc
gagttcaccgtacgcggcgcactgatcgacctgttcccgatgggcagcaagctgccgtat
cgaatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaggtcgattcggtcaagctgctgccggccaaggaattcccgctgcag
aaagaagcggtcacccggttcaaggcgcgttttcgcgagcgttttgatgtcgacttccgc
cgctgcccgatctttcaggatctgagcagcggtattaccccggccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgattacctgccccaggacactcag
gtgttctcgctgccgggcatcgagcaagcggcggaaaacttctggaacgacgtgcgcaat
cgttatgaagaacgccgcgtcgatccatcgcgtcctttattgccgcccgccgaactgttc
ctgccggtggaagactgcttcgcccgcctgaagaactggccgcgcgtggtcgccagccag
caggacgtggaaaccggcgtcggccgtgagcgcttcccggcacaggccttgccgaatctg
gcgatcgaagccaaggctacgcaaccgctggcggcactttccgccttcctcgacgaattc
ccgggacgcgtgctgttcaccgccgaatccgcaggccgacgcgaagtgctgttggagctg
ctggaccgtctgaagctgcgaccgaaaaccgtcgacagctggccggacttcgtcgcgagc
aaggatcgcctggcgatcaccattgccccgctcgacgaaggcctgatgctggatgacccg
gcgctggcactggttgcggaaagcccgctgttcggccagcgcgtgatgcagcgtcgccgt
cgcgaaaaacgcgccgacgccaacaacgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccacggtgtcggccgctatctcggcctgacgatt
ctggaaatcgacaaccaggctgccgaattcctgaccctcgagtacgccgagaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgatgca
ctggcgccgctgcaccgcctcggctccgagacctggcagaaagccaagcgcaaggctgcc
gaacaggtgcgcgacgtggctgccgaactgctcgacatctatgcccgccgcgccgcccgc
gaaggttatgcgtttgccgatccgaaagccgattacgcaaccttcagcgccggcttcccg
ttcgaggaaaccccggaccagcaatccaccatcgaagccgttcgcgaagacatgctcgca
ccgaaaccgatggatcgactggtctgcggtgacgtgggtttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgcggtgcatggcggcaagcaagtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgtgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtccgccaaggaagtgaacgctgccgtcgccgaa
ctggccgaaggcaacatcgacatcgtcatcggcacccacaagctgctacaggacgacgtc
aagatcaaaaacctcgggttggtgatcatcgacgaagaacaccgtttcggtgtccgccag
aaggaacagctcaaggccctgcgcagcgaagtcgacattctgacgctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccaca
ccgccggcgcgacgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccttgctgcgtgagctgttgcgtggcggtcaggtctactacctgcacaacgat
gtgaagaccatcgaaaaatgcgccgcagaactggccgaactggtgccggaagcgcggatc
ggcatcggccacgggcaaatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcattgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcagttgcaccag
ttgcgcggccgcgtgggtcgtagccaccaccaggcttacgcctacctgctgacaccgcca
cgccagcagatcaccggcgatgcggaaaaacgtctggaagcgattgccaatactcaggat
ctgggcgcgggcttcgtgctggccaccaacgacctggaaatccgtggcgccggagaactg
ctgggcgatggccagagcggtcagattcaggccgtcggcttcacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgattcgcaagggcgaacagccgaacctcgatcaaccgctc
ggcggcggcccggaagtcaacctgcgggtgcccgcactgattccggaagattatctgccg
gacgtgcacgcacgcctgatcctgtacaagcgcatcgcttcggccaccgacgaggaaggc
ctgaaagatctgcaggtggagatgatcgaccgcttcgggctgctgccggagccgaccaag
aatctggtgcgcatcacggcgctgaaattgcaggccgagcagctgggcatcaagaaagtc
gatggcggcccgcaaggcggacgcatcgagttcgcggcgcagacgccggtcgacccgatg
accctgatcaaactgatccagagtcagccaaaacgctacaaattcgaaggtgccacgatg
ttcaagttccaggtgccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
ttcgagcgcctcattccgaaaactgtttga
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