Paraburkholderia kirstenboschensis: RW095_27480
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Entry
RW095_27480 CDS
T09457
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RW095_27480 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_27480 (ligD)
Enzymes [BR:
pkf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RW095_27480 (ligD)
DNA repair and recombination proteins [BR:
pkf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RW095_27480 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WOD19951
LinkDB
All DBs
Position
1:1047663..1050731
Genome browser
AA seq
1022 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGAKATRKRGARNAARPGPDEGLSYVIQEHHARRLHYDFR
LELNGTLLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPVGGAAEAARAYQAGKLKFHLHGEKLHGGWTLVRSHMRGNADKEQWLLIKERDDEARP
ESEYDVLAEQPGSVLGAAPARNGKAGKQTNKQTDKQTDKQTDKRPDKQVAAKKSKAAAVR
GDPKRPDIVATRSSESLRELAASPAIEGAVAAKLPATLKPQLATLVDATPPGDDWSYEIK
FDGYRVLARIDANAKGRNVQVFTRAGNDWTAKFGKQVKAFEQLGLESAWLDGEAVVLDEN
GVPNFQALQNAFDSNRPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLR
FSNDFDFSADDLLKSACDMALEGIIGKRRESGYMSGRSATWIKLKCRRRQEFVIGGYSEP
SGSRAAFGALLLGVHDSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASPPRER
SRTPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRSDKPARQIVKEAPRKGDDVQQQTD
IEAESDTAPKKRSGRRAAAETDGDVQTSGADKKRSAGKATGEEATGMRTEKGARKVASKG
TEKGAEAVAKTTAKVTAKTTAKTGGETTATTTAAAKPASKAAKTTTSKEETADTKTAAPR
SKKSASPAEVAGVRVSHPDRVIDKSTGTRKIDLVQYYESVAQWMLPHLADRPVSLVRAPE
DIGGELFFQKHSQKLSIPNITQHPGLDPGHPPLITVESVKALVGAAQMGTIEFHTWNGVA
SNIEKPDRVVFDLDPDPSLGWDRMIEAAQLTRSLLDELGLTSFCKTSGGKGFHVVVPLSK
HAGWDEVKEFSQAVAQHMASTLPKYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARA
RPGLGVSVPLAWDEVAATTGGDQWNIENLHERLANLKNDPWADYSKTRQRITAAMRKRLN
GA
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgatctctataaccgcaagcgccgcttcgacgaaacgcccgagcct
gccggcgccaaggcgacgaggaagcgcggcgcgcgcaacgcggcgcggccaggaccagac
gagggcttgtcgtacgtcatccaggagcaccacgcgcggcgccttcactacgacttccgt
ctcgaactgaacggcacactgctttcatgggcggtgccgaaagggccgtgcctcgatccg
tcggtcaagcgtctcgctgtgcacgtcgaagatcatccggtcgaatacggttcgttcgaa
ggcgaaattccgccgggtaattacggcgctggcacggtgatcgtctgggatcgcggcacg
tgggagccggtcggcggcgcggccgaggcggcgcgtgcgtatcaggccggcaagctcaag
tttcacctgcacggcgaaaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcaacgccgacaaggagcagtggctgctcatcaaggaacgcgacgacgaggcgcgtccc
gagagcgaatacgatgttctcgcagaacagcccggcagcgtgctcggcgcggcgccggcc
cgcaacgggaaagccggcaagcagacgaacaagcaaacagataagcaaacagataagcaa
acagataagcggcccgacaagcaggttgccgcgaagaaaagtaaggcggccgccgtacgc
ggcgatccgaagcggccggacatcgtggcgacgcgcagcagcgagtcgttgcgcgaactg
gccgcgtcgcccgcgatagaaggtgcggtggcagcgaaactgcctgcgacgctgaagccc
cagttggcgacgctcgtcgacgctacgccgcctggggatgactggtcgtacgaaatcaag
ttcgacggctatcgcgtgctcgcccgcatcgacgcgaacgcgaagggccgcaatgtgcag
gtcttcacgcgagcgggcaacgactggaccgcgaagttcggcaagcaggtgaaggcattc
gaacaactgggcctggaaagcgcgtggctcgacggtgaagcggtggtgctcgacgagaac
ggcgtgcccaacttccaggcgttgcaaaacgcgttcgattcgaaccggccgcaagacatc
gtcgtctatctgttcgacgtgccgtttctgaacggctacgacttgcgcggcgtgccgctg
cagcagagacgcgcaatcctgcgcgcgctgctcgaaccggtcgacgacagcgtgctgcgc
ttttcgaacgacttcgacttcagcgccgacgatctgctgaaaagcgcgtgcgacatggcg
ctcgaaggcatcatcggtaagcggcgcgaaagcggctatatgtccggccgctcggcgacg
tggatcaagctgaagtgccgccgacgccaggagttcgtgatcggcggctattcggaaccg
tcgggcagccgcgcggcgttcggcgcactgctcctcggcgtgcacgacagcaaaggcaag
ttgcaatatgccgggcgcgtcggcaccggttttgacgccgccttgctgcgctcggtgaag
aaagaactcgacgcacacgagacgaagcgcatgccgttcgcgagcccgccgcgcgagcgc
agtcgcacgccggtgcattgggtcgagcccgtgctcgtcgcggaatgcaatttcgcggaa
tggacgagcgacggtatcgtgcgccaggcgtcgttcgtcagtttgcgcagcgacaagccg
gcgcgccagatcgtcaaggaagcaccacgcaagggggacgacgtgcaacaacaaaccgat
attgaggccgaatccgacacggcgccgaagaagcgttcgggacggcgcgcggcggctgag
actgatggcgacgtgcagacttcgggcgcagataagaagcgctccgccggcaaggcaacg
ggggaagaagcaacgggaatgcgcacggaaaagggcgcaagaaaggtcgcaagtaagggc
acggaaaagggcgccgaagcggtagctaaaaccaccgctaaggtgacggctaaaacgacg
gccaaaaccggcggcgaaacaacggctacgaccacggcggcggcgaaaccagcgagtaaa
gcagcaaaaaccaccacatcaaaagaagaaaccgcggacactaaaaccgccgctccgcgg
tcgaaaaaatccgcgtcgcccgccgaagtcgccggcgttcgcgtatcgcacccggaccgc
gtgatcgacaagagcaccggcacgcgcaagatcgacctcgtgcagtactacgaatcggtc
gcgcaatggatgttgccgcatctggcggaccggcccgtgtcgctcgtgcgcgcgcccgag
gacattggcggtgagctctttttccagaagcacagccagaagctgtcgatcccgaacatc
acacagcaccccgggctcgaccccggtcatcctccgctcatcacggtggagagcgtgaag
gcgctggtcggcgccgcgcaaatgggcacgatcgaatttcacacgtggaatggtgtggcg
tcgaatatcgaaaagccggaccgcgtcgtgttcgacctggatcccgatccgtcgctcggc
tgggaccggatgatcgaggccgctcaattgacgcgctcgctgctggacgaactcggcctc
acgtctttttgcaagacaagcggcggcaagggcttccatgtcgtggtgccgctgtcgaaa
cacgcgggctgggacgaggtgaaggagttttcgcaggccgtcgctcagcacatggctagc
acgctgcccaagtatttcagcgccaaaatgggcgcgcaaaatcgcaagcagaagatcttt
gtcgactatttgcgcaataaccgcggctcgagcacggtcgccgcgttttccgcgcgggcg
cggccggggctgggcgtttcggtgccgctcgcatgggacgaagtcgcggcgaccaccggc
ggcgatcagtggaatatcgagaacctgcacgagcgtcttgcaaatctgaagaacgacccg
tgggccgattactcgaagacgcgccagcgtatcaccgcggcaatgagaaaacgcctgaac
ggagcgtag
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