KEGG   Stutzerimonas kunmingensis: LW136_12060
Entry
LW136_12060       CDS       T08242                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pkg  Stutzerimonas kunmingensis
Pathway
pkg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pkg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LW136_12060 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pkg03400]
    LW136_12060 (ligD)
Enzymes [BR:pkg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LW136_12060 (ligD)
DNA repair and recombination proteins [BR:pkg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LW136_12060 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: UIP30905
LinkDB
Position
complement(2547707..2550271)
AA seq 854 aa
MALDEYQRMRDFAATPEPSGKARGRSRKVQSLQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPQGDPLDGY
RKGKLKFSLEGEKLAGSWNLVRTHMDGKKEQWFLIKSRDEAAREEGEYDVVTAEPNSVLS
DRTLVPRKRGPAKARVAEAPAKPVKAPARKRASRKKSDAVKLEGAVPAELPETFKPQLAT
LVDAVPSGDWRYEIKFDGYRMLARIDAGKVALFTRNGHDWTAKMPQQAAALAGLGLESGW
LDGEVVVPNEEGAPDFQALQNAFEAGRSGSILYYLFDVPYLNGMDLRDVPLEQRRAALRE
VLEGSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSSYTSRRSSSWVKIKCSNR
QEFIIVGYTEPNGTRTGFGALLLGLHDDSGKLLYAGKVGTGFNQATLKSLHRQLKKLETD
KSPLAKPAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPADAITHERA
KPASRSSKAEQRQTDPIGSGRIKISSPERVIDPSSGITKIELARFYAQIAPWALPQLRAR
PLALVRAPEGIAGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGT
IELHCWNAAAPELEHPDRFVLDLDPDPALPWKSMLEATQLTQTLLDEIGLTSFLKTSGGK
GIHIVVPLDTVHGWSEVKAFSQAIAKYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA
STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERMQELGDDDPWADMTRTRQ
TITAQMRERLGMPA
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcgctcgacgaataccagcgcatgcgcgattttgccgccacgcccgagccgtcgggt
aaggcgcgcggcaggtcacgcaaggtccagagcctgcagtactgcatccagaaacacgac
gccacgcggctgcattacgactttcgcctggagctggatggcacgctgaagagctgggcg
atccccaagggccccagccttgacccgagcgtgcgccggctggcagtgcatgtggaggat
cacccgctggaatatgccacgttcgagggctccattccggccgggcattacggcgcgggc
gatgtgatcgtctgggatcgcggcgtgtggataccgcagggtgatccactagacggctat
cgcaagggcaagctcaagttcagcctcgagggcgagaagctcgccggcagctggaatctg
gtgcgcacgcacatggatggcaagaaggagcagtggttcctgatcaagtcccgtgacgag
gccgcgcgcgaggagggtgagtacgacgtcgtcaccgccgagccgaacagcgtgctcagc
gatcgcacgctggtcccacgcaaacgcgggccggccaaggctcgcgttgcggaagcgccg
gccaagcctgtcaaggcgccggcaagaaagcgagcgtcacgcaagaagagcgacgcggta
aagctggaaggggccgtcccagccgaattgccggagacgttcaagccgcagctggcgacg
ctggtggacgccgtgccgagcggcgactggcgctacgagatcaagttcgacggctaccga
atgctcgcccgtatcgacgccggcaaggtcgcgctgtttacccgcaacggccatgactgg
acggcgaagatgccgcagcaggccgccgcgcttgccggactcgggctcgaatccggctgg
ctcgacggcgaagtggtggtgccgaacgaggagggtgctccggacttccaggcattgcag
aacgcgttcgaagccggacgcagtgggagcattctttattacctgttcgacgtgccctat
ctgaacggcatggacctgcgcgatgtgccgctggaacagcgtcgcgcggcgttgcgtgag
gtgctggaaggcagcgacagcgaattgctgcgtttctccgaggatttcaccgagcagccg
gacagcattctggaaagtgcctgccagatgaagctcgaaggcctgatcggcaagcgagcg
ggcagctcctatacctccaggcgcagcagcagctgggtcaagatcaagtgcagcaaccgg
caggaattcatcatcgtcggctacaccgagcccaacggcacgcgcaccgggttcggcgcg
ctgttacttgggctgcatgacgacagcggaaaactactctatgcaggcaaggtcggcacg
ggcttcaatcaggccacgctgaaaagtctgcacaggcagttgaagaagctggaaaccgac
aaaagccctttggccaagccggcacctgctgccgatgtgcgcggcgcgcaatggctcaaa
cccgaactgatgtgcgaggttgcctacgcggagatgacccgccaaggcgtggtccgccat
tcggtattccatggcctgcgctcggacaaacccgccgacgccattacccatgaacgagcc
aagcccgccagtcgtagcagcaaagccgagcagcggcagaccgaccccatcggcagcggg
cggatcaagatatccagtcccgagcgggtcatcgaccctagcagcggcatcaccaagatc
gaactggcccgtttctacgcgcagatcgcgccctgggccctgccgcagctgcgagcgcgc
cccctggccctggtgcgcgccccggagggcatcgccggcgagctgttcttccagaagcac
gccgacaaactggccatcccgcacatcacccaactcgacccggcgctagacccgaagcac
ggtgcgttactggtgatcgacagcgccgaagcgctggtcggcgccgcgcagatgggcacc
atcgagctgcactgctggaacgcggcagcgcccgaactggagcatccggatcgcttcgtg
ctcgacctcgacccggacccggcgctgccctggaagagcatgctcgaagccactcagctg
acccagacgctgctggacgagatcggcctgacctcgttcctcaagaccagcgggggcaaa
ggcattcacattgtcgtgccgctcgatacggtacacggctggagcgaggtgaaggccttc
agtcaggccatcgccaagtacctggcaaagctgctgccgtcgcatttttcggcggtcagc
gggccgaagaaccgggtcgggcgcatcttcatcgactacctgcgcaacagccgtggcgcc
agtaccgtcgccccttattcggtgcgtgcccgcgagggcctgccggtttcggtgccgatc
caccgcgaagaactggccgacctcaagggcgccaatctctggaccgtacgcaacctgctg
gagcgcatgcaggaactgggcgacgacgatccctgggcggatatgacgcggaccaggcag
accatcaccgcgcagatgcgcgaacgtctgggcatgccggcttaa

DBGET integrated database retrieval system