Stutzerimonas kunmingensis: LW136_12060
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Entry
LW136_12060 CDS
T08242
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LW136_12060 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkg03400
]
LW136_12060 (ligD)
Enzymes [BR:
pkg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LW136_12060 (ligD)
DNA repair and recombination proteins [BR:
pkg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LW136_12060 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UIP30905
LinkDB
All DBs
Position
complement(2547707..2550271)
Genome browser
AA seq
854 aa
AA seq
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MALDEYQRMRDFAATPEPSGKARGRSRKVQSLQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPQGDPLDGY
RKGKLKFSLEGEKLAGSWNLVRTHMDGKKEQWFLIKSRDEAAREEGEYDVVTAEPNSVLS
DRTLVPRKRGPAKARVAEAPAKPVKAPARKRASRKKSDAVKLEGAVPAELPETFKPQLAT
LVDAVPSGDWRYEIKFDGYRMLARIDAGKVALFTRNGHDWTAKMPQQAAALAGLGLESGW
LDGEVVVPNEEGAPDFQALQNAFEAGRSGSILYYLFDVPYLNGMDLRDVPLEQRRAALRE
VLEGSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSSYTSRRSSSWVKIKCSNR
QEFIIVGYTEPNGTRTGFGALLLGLHDDSGKLLYAGKVGTGFNQATLKSLHRQLKKLETD
KSPLAKPAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPADAITHERA
KPASRSSKAEQRQTDPIGSGRIKISSPERVIDPSSGITKIELARFYAQIAPWALPQLRAR
PLALVRAPEGIAGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGT
IELHCWNAAAPELEHPDRFVLDLDPDPALPWKSMLEATQLTQTLLDEIGLTSFLKTSGGK
GIHIVVPLDTVHGWSEVKAFSQAIAKYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA
STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERMQELGDDDPWADMTRTRQ
TITAQMRERLGMPA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacgaataccagcgcatgcgcgattttgccgccacgcccgagccgtcgggt
aaggcgcgcggcaggtcacgcaaggtccagagcctgcagtactgcatccagaaacacgac
gccacgcggctgcattacgactttcgcctggagctggatggcacgctgaagagctgggcg
atccccaagggccccagccttgacccgagcgtgcgccggctggcagtgcatgtggaggat
cacccgctggaatatgccacgttcgagggctccattccggccgggcattacggcgcgggc
gatgtgatcgtctgggatcgcggcgtgtggataccgcagggtgatccactagacggctat
cgcaagggcaagctcaagttcagcctcgagggcgagaagctcgccggcagctggaatctg
gtgcgcacgcacatggatggcaagaaggagcagtggttcctgatcaagtcccgtgacgag
gccgcgcgcgaggagggtgagtacgacgtcgtcaccgccgagccgaacagcgtgctcagc
gatcgcacgctggtcccacgcaaacgcgggccggccaaggctcgcgttgcggaagcgccg
gccaagcctgtcaaggcgccggcaagaaagcgagcgtcacgcaagaagagcgacgcggta
aagctggaaggggccgtcccagccgaattgccggagacgttcaagccgcagctggcgacg
ctggtggacgccgtgccgagcggcgactggcgctacgagatcaagttcgacggctaccga
atgctcgcccgtatcgacgccggcaaggtcgcgctgtttacccgcaacggccatgactgg
acggcgaagatgccgcagcaggccgccgcgcttgccggactcgggctcgaatccggctgg
ctcgacggcgaagtggtggtgccgaacgaggagggtgctccggacttccaggcattgcag
aacgcgttcgaagccggacgcagtgggagcattctttattacctgttcgacgtgccctat
ctgaacggcatggacctgcgcgatgtgccgctggaacagcgtcgcgcggcgttgcgtgag
gtgctggaaggcagcgacagcgaattgctgcgtttctccgaggatttcaccgagcagccg
gacagcattctggaaagtgcctgccagatgaagctcgaaggcctgatcggcaagcgagcg
ggcagctcctatacctccaggcgcagcagcagctgggtcaagatcaagtgcagcaaccgg
caggaattcatcatcgtcggctacaccgagcccaacggcacgcgcaccgggttcggcgcg
ctgttacttgggctgcatgacgacagcggaaaactactctatgcaggcaaggtcggcacg
ggcttcaatcaggccacgctgaaaagtctgcacaggcagttgaagaagctggaaaccgac
aaaagccctttggccaagccggcacctgctgccgatgtgcgcggcgcgcaatggctcaaa
cccgaactgatgtgcgaggttgcctacgcggagatgacccgccaaggcgtggtccgccat
tcggtattccatggcctgcgctcggacaaacccgccgacgccattacccatgaacgagcc
aagcccgccagtcgtagcagcaaagccgagcagcggcagaccgaccccatcggcagcggg
cggatcaagatatccagtcccgagcgggtcatcgaccctagcagcggcatcaccaagatc
gaactggcccgtttctacgcgcagatcgcgccctgggccctgccgcagctgcgagcgcgc
cccctggccctggtgcgcgccccggagggcatcgccggcgagctgttcttccagaagcac
gccgacaaactggccatcccgcacatcacccaactcgacccggcgctagacccgaagcac
ggtgcgttactggtgatcgacagcgccgaagcgctggtcggcgccgcgcagatgggcacc
atcgagctgcactgctggaacgcggcagcgcccgaactggagcatccggatcgcttcgtg
ctcgacctcgacccggacccggcgctgccctggaagagcatgctcgaagccactcagctg
acccagacgctgctggacgagatcggcctgacctcgttcctcaagaccagcgggggcaaa
ggcattcacattgtcgtgccgctcgatacggtacacggctggagcgaggtgaaggccttc
agtcaggccatcgccaagtacctggcaaagctgctgccgtcgcatttttcggcggtcagc
gggccgaagaaccgggtcgggcgcatcttcatcgactacctgcgcaacagccgtggcgcc
agtaccgtcgccccttattcggtgcgtgcccgcgagggcctgccggtttcggtgccgatc
caccgcgaagaactggccgacctcaagggcgccaatctctggaccgtacgcaacctgctg
gagcgcatgcaggaactgggcgacgacgatccctgggcggatatgacgcggaccaggcag
accatcaccgcgcagatgcgcgaacgtctgggcatgccggcttaa
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