Pseudomonas khazarica: JLK41_08220
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Entry
JLK41_08220 CDS
T07269
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pkh
Pseudomonas khazarica
Pathway
pkh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JLK41_08220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkh03400
]
JLK41_08220 (mfd)
Enzymes [BR:
pkh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JLK41_08220 (mfd)
DNA repair and recombination proteins [BR:
pkh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JLK41_08220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTS88134
LinkDB
All DBs
Position
complement(1760233..1763670)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLAIAEAASTAERFTLVLTEGSQSAERLQEELAF
FAPSLPVLHFPDWETLPYDVFSPHQDIISQRVATLYQLPQLKRGILVVPISTALHRLAPK
NFLLGSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLYPMGSETPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVSDFRGRFRERFDVDFR
RCPIYQDLSSGITPAGIEYYLPLFFEATGTLFDYLPGDTQVFSLPGIEKAAEQFWLDARN
RYEDRRVDPERPLLPPADIFLPVDDCFAQLKSWPRVVANPEDIEPGVGRTRFDARALPDL
AIQAKAGEPLAALRRFIEEYQGRVLFCAESAGRREVLLELLARLKLKPREVDGWPAFVAS
GERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLITMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYSGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPAVDYATFSAGFPFEE
TPDQQAAIDAVRGDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEENKPTIKEALLRELLRGGQVYYLHNDVKSIEKCAADLAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKSMTEDAQKRLEAIAGAQDLGAGFILATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
ARLILYKRISSASDEDGLKELQVEMIDRFGLLPEPTKHLMRLTLLKLQAEKLGITKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALFER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctgccggccagtgccggcaaacagcaatggggcaac
ctgcctggcgccgccctttccctggcgattgccgaggccgccagcactgccgagcgcttc
accctggtcctgaccgagggcagccagagcgccgaacgcctgcaggaagaactggccttc
ttcgcccccagcctgccggtgctgcatttccccgactgggaaaccctgccctacgacgtc
ttctcgccccaccaggacatcatctcccagcgcgtcgccaccctgtatcagctgccgcag
ctgaagcgcgggatactggtagtgccgatcagcactgccctacaccgcctggcgccgaag
aacttcctgctcggcagcagcctggtgctggatgtcggccagaagctggacgtggagcag
atgcgcacgcgcctggaggccgccggctaccggtgcgtcgacacggtctacgaacacggc
gagttcgccgtgcgtggtgcgctgatcgacctctacccgatgggcagcgaaacgccctac
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcaccttcgaccccgagacgcag
cgctcggtggacaaggtcgagtcgattcgcctgctgccggcacgcgagttcccgctggag
aagaaggccgtcagcgattttcgcgggcgctttcgcgaacgcttcgacgtcgacttccgc
cgctgcccgatctatcaggatctgtcttccggcatcaccccggcaggcatcgagtactac
ctgccgctgttcttcgaggccaccggcaccctgttcgactacctgccgggcgacactcag
gtgttctcgctgccgggcatcgagaaagccgccgagcagttctggctggacgcgcgcaac
cgctacgaggatcgccgcgtcgacccggagcgcccgctgctgccgcccgccgacatcttc
ctgccggtggacgactgctttgcccagctgaaaagctggccacgggtggtggccaacccc
gaggacatcgaacccggtgtcggccgcacgcgcttcgacgcccgcgccctgcccgacctg
gcgatccaggccaaggccggcgagccgctggcggcgctgcgccgcttcatcgaggagtac
cagggccgtgtgctgttctgcgccgaatcggccgggcgccgcgaagtgctcctggagctg
ctcgcccgcctcaagctcaagcccagggaggtcgacggctggccggccttcgtcgccagc
ggcgaacgcctgaacatctgcattgccccgctggacgaaggcctgctgctcgatgacttg
gcgctgatcgccgaaagcccgctgttcggccagcgcgtgatgcagcgtcgccgccgcgag
aagggccgcgaaggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggcgcg
ccggtggtgcatatcgaccacggcgtcggccgctacctgggcctgatcaccatggaattc
gacggccaggccgccgagttcctcgccctgcaatacgccgacgaggccaagctctacgtt
ccggtggccagcctgcacctgatcgcccgctacagcggcagcgacgatgccctggcgccg
ctgcaccggctgggttcggaaacctggcagaaagccaagcgcaaggctgccgagcaggta
cgcgacgtcgccgccgaactgctcgacatctacgcccgccgcgccgcccgcgaaggcttc
gccttccaggacccggcggtggactacgccaccttcagcgccggcttccccttcgaggaa
accccggaccagcaggcggcgatcgatgccgtgcgcggcgacatgctggccggcaagccg
atggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtgcacagcggcaagcaggtggcggtgctggtgcctaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcgaaggcgccgtgcagcaactggccgaa
ggcaaggtggatatcgtcatcggcacccacaagctgctgcaggacgacgtgaagttccac
aacctgggcctggtcatcatcgacgaggaacaccgtttcggcgtgcgccagaaggaacag
ctcaaggccctgcgcagcgaggtggacatcctcaccctcaccgccacgccgatcccgcgc
accctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccaccccgccggcg
cggcgcctgtcggtgcgcaccttcgtcatggaagagaacaagccgaccatcaaggaagcg
ctgctgcgcgaactgttgcgcggtggccaggtgtattacctgcacaacgatgtgaagagc
atcgagaagtgcgccgccgacctcgccgagctggtaccggaagcgcgcatcggcatcggc
cacgggcagatgcgcgagcgcgatctggaacaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcccagctgcaccagctgcgtggc
cgcgtcggccgcagccaccaccaggcctatgcctacctgctgacgccgccgcgcaagagc
atgaccgaagatgcgcagaagcgcctggaagccattgccggcgcccaggacctcggcgcc
ggcttcatcctcgccacccacgacctggaaatccgtggcgccggcgagctgctcggcgac
ggccagagcgggcagatccaggcagtgggcttcaccctgtacatggaaatgctcgagcgt
gcggtcaaggccatccagaaaggcgaacaacccaacctcgaccagccactgggcggcggc
ccggagatcaacctgcgcgtgcccgcgcttatccccgaggactacctgcccgacgtgcac
gcgcgcctgatcctgtacaagcgcatttcctcggcctccgacgaagacggcctgaaggaa
ctgcaggtcgagatgatcgaccgcttcggcctgctgcccgagccgaccaagcacctgatg
cgcctgaccctgctcaagctgcaggccgagaagctgggcatcaccaaggtcgacgccgga
ccgcagggcggccgcatcgagttcgccgcagagacctgcgtcgacccgctgacgctgatc
aagctgatccaggcccagcccaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgccgatggagcgcgcggaagagcgcttcaacaccctggaagccctgttcgagcgc
ctcgcgcccaccacctga
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integrated database retrieval system
