Pseudomonas kurunegalensis: QQ992_08670
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Entry
QQ992_08670 CDS
T09327
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pkk
Pseudomonas kurunegalensis
Pathway
pkk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QQ992_08670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkk03400
]
QQ992_08670 (mfd)
Enzymes [BR:
pkk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QQ992_08670 (mfd)
DNA repair and recombination proteins [BR:
pkk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QQ992_08670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
WJD64347
LinkDB
All DBs
Position
complement(1927381..1930830)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFAQLKQWPRVVVSSEDLDPGVGRERFPARALPNL
AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLDRLKLRPHTVDGWHDFITG
SERLAITIAPLDDGLVLDDPGLALVAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVATAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLLAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggtgccgccctcagccttgccatcgccgaggccgccagcagcgctggccgcttc
accctgctgctgacggccgacagccaggccgccgaccgtctggaacaggagctgcgcttc
tttgccccggacctgccggtgctgccgttccccgattgggaaaccctgccctatgacctg
ttctcgccacaccaggacatcatttcccagcgcatcgccagcctgtaccgcctgccggag
ctgagccacggcatcctcgtggtgccggtcaccaccgccctgcaccgtctggcacccaca
cgctttctgctaggcagcagcctggtgctggatgtgggccagaccatcgacgtggaacag
atgcgtacgcgcctggaggccagcggctatcgctgcgtcgacaccgtgtacgagcatggc
gagtttgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaaactgccctac
cgtatcgacctgttcgatgacgagatcgagacgctgcgcaccttcgaccccgagacacag
cgctcgatcgacaaggtggattcggtgcgcctgctacccgcgcgcgaattcccgatgcag
aaagaggaagtgacccgtttcaaggcgcgcttccgtgagcgcttcgacgtcgacttccgc
cgcagcgccatcttccaggacttggccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccggccgacacccag
gtgttctcgctgcccggtgtggaacaggctgccgaacacttctggaacgacgtgcgcggg
cgttacgaagaccgtcgtggcgacctgagccgcccactgctgccaccggccgagctgttc
ctgccggtcgaggactgcttcgcccagctcaagcaatggccgcgtgtggtggtcagcagc
gaagacctcgacccaggtgtaggccgcgagcgcttcccggcgcgtgccctgcccaacctg
gccattgaggccaaggccaaccagccgctggccgaactggccaacttcctcgaccagttc
cccggccgcgtgctgtttaccgccgaatcggcgggccgccgcgaagtgttgctggaactg
ctcgaccggctgaagctgcgcccgcataccgtcgacggctggcacgatttcattaccggc
agcgagcgcctggcaatcaccattgccccactggacgacggcctggtgctggacgaccca
ggcctggccctggtggccgaaagcccgctgttcggccagcgggtgatgcagcgccgacgc
cgcgacaagcgtggcgaaaccgccaacgacgccgtcatcaagaacctcaccgagctgcgc
gaaggcgcaccagtggtgcacatcgaccacggtgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgagttccttaccctggaatacgccgagaacgccaag
ttgtatgtgccggtggccaacctgcacctgatcgcccgctacaccggtagcgacgacgcg
ctggcgccgctgcaccggctgggctcggaggcctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgagttgctcgacatctatgcccgccgcgctgcgcgc
aagggttatgcgtttgccgacccgtctgccgactatgccaccttcagcgccggcttcccg
ttcgaagaaaccccggaccagcaagccgccatcgaagccgtgcgtgccgacatgctggca
cccaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaaaaccgaagtggcc
atgcgcgccgcgttcatcgccgtgcacagcggccgccaggtggccgtgctggtgcccacc
accctgcttgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaaatccgccaaggaagtggccaccgctgccgccgac
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgttgcaggacgatgtg
cgcttcaaggacctgggcctggccatcatcgacgaagaacaccgttttggcgtgcgccag
aaggagcaactgaaggccctgcgcagcgaggtcgacatccttaccctcaccgccacgccg
attccgcgtacgctgaacatggcggtagcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgccgcctgtcggtgcgcaccttcgtcatggaacagaacaagagcacggtc
aaagaggcgctgttgcgcgaactgctgcgcggtggccaggtgtactacctgcacaacgat
gtgaaaaccatcgaaaaatgcgccgccgacctcgccgaactggtacccgaggcgcgcatc
ggcattggccacgggcaaatgcgcgagcgcgagctggaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctggtggcctcgaccatcatcgaaaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgaacgtgccgacaagttcggcctggcccagctgcaccaa
ctgcgtggccgggttggccgtagccaccaccaggcttacgcctacctgctcacgcccact
cggcaaaaagtcagcgccgacgccgaaaaacgcctggaggccatcgccaacacccaggac
ctgggtgccggtttcgtactggccaccaacgacctggaaatccgtggcgcgggcgagctg
ctgggcgaaggccagagcgggcagatccaggcggtgggcttcacgctgtacatggaaatg
ctcgaacgtgcggtgaaggcgattcgcaaaggcacccagccgaacctcgaacagccactg
ggcggtggcccggagatcaacctgcgcctgccggcgctgatccccgaagactacctgccc
gacgtgcacgcacggctgatcctctacaagcgcattgcctcggcggccgacgaagaaggc
ctcaaagacctgcaagtggaaatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctgatgcgcctgacctcgctcaagctgcttgcggaaaagctcggcatcaagaaagtc
gacgccggccccaatggcggcaagctcgagttcgaggccgaaaccccggtcgacccgctg
accctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggtgcgacccag
ttccgtttcctggtgccgatggagcgccccgacgaacgtttcaacaccctggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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