Pipistrellus kuhlii (Kuhl's pipistrelle): 118726056
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Entry
118726056 CDS
T07682
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pkl
Pipistrellus kuhlii (Kuhl's pipistrelle)
Pathway
pkl03013
Nucleocytoplasmic transport
pkl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pkl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118726056 (UPF1)
03015 mRNA surveillance pathway
118726056 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkl03019
]
118726056 (UPF1)
Enzymes [BR:
pkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118726056 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118726056 (UPF1)
Messenger RNA biogenesis [BR:
pkl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118726056 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118726056 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118726056
NCBI-ProteinID:
XP_036306311
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDVQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcatacgggcccagctcgcagacgctcactttcctggacaccgaggag
gccgagcttctcggcgccgacacacaaggctccgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggccccggaggtggcggcccgggg
gtcccggtcggcgcaggtgctggcgctgctgctggacaacttgacgttcaggttggagga
cctgagggcatcctgcagaatggggctgtggatgacagtgtggccaagaccagccagttg
ctggccgagttgaacttcgaagaagatgaagaagatacctattacacaaaggacctacca
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcctcttggtgagaca
gttctggagtgttacaactgtggctgccgcaacgttttcctgcttggcttcatccctgcc
aaggctgactcagtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctaatccaggatcgctgcttcctc
tcctggctggtcaagatcccttcagagcaggagcagcttcgggcccggcagattaccgcc
cagcagatcaacaagttggaggagctttggaaggagaatccttctgccaccttggaggac
ctagagaagcccggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgacaagaaa
ctgaaagagtcacagactcaagacaacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggg
gacctggcgcccctgtggaaagggattggccacgtcatcaaggtccctgataattatggc
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacccataac
ttccaggtggattttgtgtggaagtccacctcatttgacaggatgcagagtgcactaaag
acttttgcggtcgatgaaacttctgtatcaggttatatctaccataagctgcttggccat
gaggtggaggacgtaatcatcaagtgccagctgcccaagcgcttcactgcacaggggctg
cctgacctcaaccactctcaggtttacgctgtgaagactgtgctgcaaagaccgctgagc
ctgatacagggaccgccaggaacagggaagacagtgacctctgccaccattgtctaccac
ctggcacggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctcaaagttgtgcggctctgtgccaagagc
cgcgaggccattgactccccggtgtcattcctggccctacacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaggacgagactggggagttgtca
tctgccgatgagaagcggtaccgagccctgaagcgcacagctgaaagggagctgctcatg
aatgcagacgtcatctgctgcacgtgtgtgggtgcaggggaccccaggcttgccaagatg
cagttccgctccattcttatcgacgagagcacccaggccacggagccagagtgcatggtc
cctgtggtccttggagccaagcagctgatccttgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaggcagccaaggccgggctgtctcagtcactgtttgagcgcctg
gtggtgctcggcattcgtccaatccgcctgcaagttcagtatcggatgcaccctgcactc
agtgccttcccttccaacatcttctacgagggctctctgcagaacggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccagcctgataagccgatgttcttc
tatgtgacccagggccaggaggagatcgccagttcgggtacctcctacctgaacaggacg
gaggctgcaaatgttgagaagatcaccacaaagctgctgaaggcaggagccaagccggac
cagattggcatcatcacaccctatgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctgtaccaggaggtggagattgccagtgtggatgca
tttcaggggcgtgagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccccaggcggcttaacgtggccctgacccgagccagatat
ggggtcatcattgtgggcaaccctaaggccctgtccaagcagcccctgtggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcccctgaataacctgcgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgaccacagccatgtatgacgcccgcgaggccatcatcccgggatccgtctacgat
cggagcagccagggccggccctcgaacatgtacttccagacccacgaccagctcggcatg
atcagtgctggccccagccatgtggccgccatgaacattcccatccccttcaacctggtc
atgccacccatgccacctccagggtattttggacaggctaatgggccagctgcaggccga
ggtaccccaaaaggcaagacgggccgtggtggacgccagaagaaccgctttggccttcct
gggcccagccagacgaacctgcccagcagccaggccagtcaggatgtggcatcacagccc
ttctctcagggggccctgacacagggctacatctccatgagccaaccctcccagatgagc
cagcctggtctctcccagcccgagctgtcccaggacagttaccttggtgatgaatttaag
tcccaaattgatgtggcgctgtcgcaagactccacgtaccagggagagcgggcgtaccag
catggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
