Pseudomonas kermanshahensis: PZ739_14100
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Entry
PZ739_14100 CDS
T08964
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pkm
Pseudomonas kermanshahensis
Pathway
pkm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PZ739_14100 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkm03400
]
PZ739_14100 (ligD)
Enzymes [BR:
pkm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PZ739_14100 (ligD)
DNA repair and recombination proteins [BR:
pkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PZ739_14100 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
SL4P
Motif
Other DBs
NCBI-ProteinID:
WEL52971
LinkDB
All DBs
Position
complement(3163618..3166110)
Genome browser
AA seq
830 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPSGKRGRGRKPHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPEGHYGAGDVIVWDRGIWEPEGDAQQA
YAKGKLRFRLQGEKLNGVWNLFRTHLAGKKEQWMLVKSHDGEARSEADYSIVEAQPDSVL
SERSLVPRRSKPAEKAAPRTRKRKAGAQKAPLPDTLQPQLATLVDSPPAGDWLYEVKFDG
YRILARIDGDDVRLFTRNGHDWSTKLPHQREALRTLGLDSAWLDGEMVVNDEHGVADFQA
LQNAFDVEDDQHILYYLFDLPFLGGEDLRQLPLQARRKTLQQLLEQADSEWLRFSEGFDQ
PVDSLLDSACRMNLEGLIGKRADSPYTGRRSADWVKLKCQQRQEFVIVGYTDPKGSRSGF
GALLLAVHDDGGALRYAGKVGTGFSAATLETLHARLKPLETPKPVLSKPPTGAEARGVHW
LKPTLLAEVAYAQMTRDGVVRHAVFHGLRDDKPATAIDLEHAMPGKSVAKTKAQHKPEAL
GELSLTHPDRVIDATRATTKRQVAEYYAQVSQWILPQLKNRPVALVRAPEGLGGELFFQK
NAGQLHIPNVVSYDKKQAGQAAMVINRADTLLGAVQMNMLELHTWNATDKDFDKPDRFVL
DLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGIHIVVPLTRKAGWDEVKDFS
HAIVDYLANLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVPIW
REELAGLKGANQWHIGNLHERLAEVDDPWADMGKTRQSITARMRKQLGLG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaataccagcgcaagcgtgacttcaatgctacgcccgagccg
agtggtaaacgtggccggggccgcaagcctcatgccctgcagttctgcatccagaagcac
gacgccagccacctgcactacgacttccgcctggagctcgacggcacgctcaagagctgg
gcgatccccaaaggcccgtcgctggacccgaaggtgcggcgcttggccgtgcatgtggag
gatcacccgctggactacgccgatttcgagggcaatatccccgaaggccattacggcgcg
ggcgatgtaatcgtctgggaccgtggtatttgggagcctgaaggtgatgcgcagcaggcc
tacgccaagggcaagctgcgctttcgcctgcaaggcgagaagctcaacggcgtctggaac
ctgttccgcacccacctggctggcaagaaagagcaatggatgctagtcaaatcccacgat
ggcgaagcccgtagcgaggccgattacagcatcgtcgaagcccagcccgacagcgtgctc
agcgagcgcagcctggtccccaggcgtagcaagcctgccgaaaaagcggcgccgcgtacc
cgaaaacgcaaggcaggcgcacagaaggccccgttacccgacacgctgcaaccgcaactg
gcgaccctagtcgactcgccacccgccggcgactggttgtacgaggtcaagttcgatggc
taccggattctcgcgcgcatcgacggcgatgacgtgcgtctttttacccgcaatggccac
gactggagcaccaagctgccccatcagcgagaggcactgcgcacgctgggcctcgactcg
gcctggttggacggcgaaatggtggtcaatgacgaacacggcgtggccgacttccaggcc
ctgcagaacgcctttgacgtggaggacgaccagcacatcctctattacctgttcgacctg
cccttcctgggcggcgaggacctacgccagttaccgctgcaagcgcggcgcaaaaccctg
caacagctgcttgaacaggccgactcagagtggctgaggttttccgaaggtttcgatcaa
ccggtcgactccctgctcgacagcgcctgccgcatgaacctggaaggcttgatcggcaag
cgcgccgacagcccttacaccgggcgccgcagcgccgactgggtcaagctcaagtgccag
caacgccaggagttcgtgattgtcggctacaccgaccccaagggcagccgcagcggtttt
ggcgccttgctgctggccgtgcacgacgacggcggcgcgctgcgctatgccggcaaagtc
ggtacagggttcagtgctgccaccctggaaacccttcatgcgcgactcaaaccgttggaa
acccccaagccggtgctgagcaagccgccgaccggcgccgaagcccggggcgttcactgg
ctcaagccgacgttgctggccgaagtcgcctacgcacagatgacccgagacggcgtggtg
cgccatgcggtgttccacggcctgcgtgatgacaaacccgcgaccgcgatcgacctggag
cacgccatgcctggcaagtccgtggccaaaaccaaggctcaacacaagcccgaggcgttg
ggcgaattgagcctgacccaccctgaccgcgtcatcgacgccacccgcgccaccaccaaa
cgccaagtcgccgaatactatgcgcaggtgagccaatggatcctgccccagctgaaaaac
cgccccgtggcgctggtacgcgcacccgaaggcctcggtggcgagttgttcttccagaaa
aacgctggccaactgcacatccccaacgtggtcagctacgacaagaaacaggccggccag
gccgccatggtcatcaaccgcgccgataccctgctgggcgcggtgcagatgaacatgctc
gaactgcacacctggaacgccaccgacaaggacttcgacaaaccggaccgcttcgtgctc
gacctggacccggacccggcgctgccctggaaagccatgctggaggccacgcagctgacc
ttgaccttgctcgacgaacttggcctgaaggtgtttctgaagaccagtggtggcaagggc
attcacattgtcgtgccgctgacccgaaaagcgggctgggacgaggtgaaggacttcagc
catgcgatcgtcgattacctagccaacctgttccccgatcgcctcagcgccgtgtcgggc
ccgaagaaccgggtcgggcgcattttcatcgactatctgcgcaatggtaaaggcgccacc
accgcctgtgcctactccttgcgtgcgcgggagggcctgccggtgtccgtgccgatctgg
cgtgaagagctggccgggctcaagggtgccaatcaatggcacatcggcaacctgcacgag
cgcctggccgaggtcgacgacccctgggccgacatgggcaagacccgtcaatcgatcact
gcgcgcatgcgcaaacagctagggctgggctga
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