Plasmodium knowlesi: PKNH_1234100
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Entry
PKNH_1234100 CDS
T01094
Name
(RefSeq) U3 small nucleolar RNA-associated protein 12, putative
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
pkn
Plasmodium knowlesi
Pathway
pkn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pkn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PKNH_1234100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pkn03009
]
PKNH_1234100
Ribosome biogenesis [BR:
pkn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PKNH_1234100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
WDR54
Utp12
Nup160
BBS2_C
NBCH_WD40
Nrf1_DNA-bind
Motif
Other DBs
NCBI-GeneID:
7321927
NCBI-ProteinID:
XP_002260393
UniProt:
A0A5K1VEE7
A0A384KYX9
LinkDB
All DBs
Position
12:1517379..1521257
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AA seq
1237 aa
AA seq
DB search
MVKSYDRYEFEDCFGIVNSKTSNCVFLNSSSILSGHDECVSLWNIQEKEIKKKLTVPFTP
PYYFFSYHVTHICVNPKDKNMIAVGYVNGCIKVFDLESNKVTSTFSGHTSGINKLKFNED
GNYLCSCGKDTNIILWDVVNDQGLFKLEGHTNIVNDIEFLRRKNNYVDNFVNNNLLISAS
KDCLIKVWDLNIQLCVQTVVDCEEEITSILINETNTRLIVACNSAVKVYKVDINVGGHDK
FSSSSKVYLTFLTSIKRANNSRIQNMKMIFLVQSEDHYDSLDVQEERLLYDDDEEDEDEN
IWNHSEKKQAEDGEDASDDGTTNDGNAKGKKPNRNEDSTENLPYGKKPNSGLNQTDKHIL
SVIKKSLNKSIKLCNRSSYCADGDNNGILLCCTNSKKIELYKINSMKNQKKSEKNKKKRI
LEKLKKKKKAILKEAQRVEKFKGTQNIDFTNLMEEVKSLEEEIAVHGKYHFHTANDEVKF
LFHYNCKFRLQYLDVYRRRKRDTYIYLLAAYVTNRLSVFQVNLFDVLTKRDEFVVRGGDE
EIRNDGKGDGEEDVGEEDDKDDDNDDEKDDNEEEEDDDEDDEDDDDDDKEEEEDDGKDDD
QSDDDESKRDHAPKDEARGDLGAPAKIVEKKIYDYSKCFKETCEINKGHNSTVQFLSLSD
KNELLVSICKKYVKVWSMRTFQNTITINLEGCTNALFCEDDEYVLISDDTGYIYLYELSN
IEMRHSYKAHANGIISMCKNLKHNRFLSVGEESYLKVFQLCWREGGAESNGESSDEGEES
EDAPRGNPPNSAKKRRRISTTGEGQPAELHSEEEEKTEKTTHLTFNEVDCYNLTDKVSCA
IYSPNGKFICVGYLNNLIEVLYSDTLKLHLTLYGHSLPITCMDISKDNTVLASSSADKFL
FLWNIEYGSITKRMHTNCDVLTKVVFFNKSNNLISVSRDGLIKMWDAIKFQCICTMDGNF
GVLTSLAINIEDNYFLTSGTHRSIRCWMKKEDDMIFLEEERDKELNLQIEKEAVRNDISY
PSSVEKNALLSKATIKTIDTIKSSEKLIEYLDIIDEELTLLDIYFKNLTEYEEAKRKNEL
PDFVQPPNKVKPRPELLNKNPFEFIIEVMCHIKKNILHEVLISLPFSYAYKLLNYIKTYL
MAFYFFQRIQNDYGKFKICGDLSFHVEYSINIVLSIVNIYRNQFLFDVKFRFLLYELHQL
IIPHLRRSLDQCAFNQSTLNFMLHGMDDEEVNVDGAL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagtcatacgatagatacgagttcgaggactgcttcggcattgtcaattcgaaa
acttccaactgcgttttcctgaacagtagtagcattttgtcagggcatgatgaatgtgta
agcctatggaatatacaagagaaggaaataaagaagaaactcacagtacccttcacacct
ccgtattattttttctcctaccatgtgacgcacatatgtgtaaaccccaaggataaaaat
atgatcgccgtggggtatgttaatggatgtattaaagtatttgatttagaatcgaacaaa
gtcacttcgactttctcaggacatacatcaggtataaataaattgaaatttaatgaggat
ggtaattatctatgctcatgtgggaaggacacgaatattatactgtgggatgtggtaaac
gatcaaggattatttaaattggaggggcacaccaatatcgttaacgatatagagtttctg
agaaggaaaaataattatgtagataattttgtgaataataatttgcttatcagtgcatcg
aaggattgcctcatcaaagtttgggatttaaacattcagttatgtgtccagactgtggtc
gactgtgaagaagaaattacgtccattctgattaacgaaacaaatactaggttaatcgtc
gcttgcaattctgccgtgaaggtgtacaaagttgacatcaacgttggtgggcacgacaag
tttagtagctcctcgaaggtgtacttgaccttcctaacctccattaaacgagccaacaac
agtcgaatacaaaatatgaagatgatttttcttgttcaaagtgaggaccactacgatagc
ctcgatgtgcaggaggaacgtttgctttatgatgacgatgaggaagatgaggatgaaaat
atttggaaccattcggaaaaaaaacaagccgaagacggagaagatgcttcagatgatggc
accaccaatgatgggaatgcaaaggggaaaaaaccaaaccggaatgaagactcaacagag
aatttgccctatgggaagaaacccaattcgggcctcaatcaaaccgataaacacatttta
agtgttataaagaaatcgctgaacaaatcgataaaattgtgcaaccgaagtagttactgc
gcagatggggacaacaatggaatcctcctctgttgtacgaactctaaaaaaatcgagttg
tacaaaataaactctatgaagaaccagaaaaaatcagaaaaaaataaaaaaaaaagaatc
ttggaaaaattaaagaagaaaaaaaaagccattttgaaagaagcccaaagggtagagaag
tttaaaggaacacaaaacatagattttactaacttgatggaggaagtgaaaagtctggag
gaagaaattgctgtacatggtaagtatcacttccacacagccaatgatgaggtaaagttt
ttgtttcattacaactgcaagttcaggctacaatacctggacgtgtaccgcagaaggaag
agggacacctatatctacctactcgcagcgtacgtgacgaatcgtttgagcgtgttccaa
gtgaacctcttcgacgttttgactaaaagggatgaattcgtcgtcagggggggtgacgag
gaaatacgcaatgatggcaagggcgatggtgaggaggatgttggggaggaggatgataag
gacgacgataacgatgatgagaaagatgataacgaagaggaagaagatgatgatgaggac
gatgaagatgacgatgatgatgataaggaggaggaggaagacgatggaaaagacgatgac
caaagcgatgatgatgaatccaagagggatcacgctcccaaagatgaagcacgcggagac
ctcggcgcgcctgccaaaattgtggagaaaaaaatttatgattactccaagtgcttcaag
gagacgtgcgaaataaacaaggggcacaacagtacggtacagtttttgagcctctccgac
aagaacgagctgttggtgtccatctgcaagaagtacgtgaaggtgtggagcatgcggacc
ttccagaataccatcaccataaacttggaggggtgtacaaacgcgttgttttgcgaagac
gatgagtatgtcctcattagcgacgacactgggtacatctacctgtacgagttgagcaac
attgagatgaggcactcgtacaaggcgcacgcgaatgggatcatcagcatgtgcaagaat
ctgaaacataaccgttttctgtccgtcggggaggagagctacttgaaggtgtttcaactg
tgctggcgagaggggggcgctgaatcgaacggtgaatcgagcgacgaaggagaggagagc
gaggatgccccaaggggcaacccacccaatagcgcgaaaaaacggcggagaataagcacc
acgggggaaggccaacctgcggaattgcactcggaggaggaagagaagacggagaaaacg
acccacctgaccttcaacgaagtggactgctacaacttaaccgacaaagtgagttgcgca
atttattcacccaacgggaagttcatctgcgtgggttacctgaacaacttgatagaggtg
ctctacagtgacaccctaaagctgcacttaacattgtatggacatagccttcccatcacg
tgcatggacatatcaaaagacaacacagtgctggcgtccagttcagcagacaagtttctc
ttcctgtggaatatagaatacggaagtatcacgaagaggatgcatacaaattgtgatgta
ctgacaaaggtggttttctttaacaaaagcaataatttgataagtgtatctagagatggg
ttgataaaaatgtgggacgcaataaaattccagtgtatctgtaccatggatgggaatttt
ggagttctcacttcgctagctataaatatagaggacaattatttccttacgtcaggaacg
catcgaagtatcagatgctggatgaaaaaagaagatgacatgattttcttagaagaagaa
agagataaagaattgaatttacaaatagagaaggaggctgtcagaaatgatatatcttac
ccatcctctgtagaaaagaatgctcttctaagcaaggccactattaaaacgattgacacc
ataaaatcgtctgaaaagttaatagaatacttggatataattgacgaggaattaacctta
ctggatatttattttaaaaatttaaccgagtatgaagaagcaaaaaggaaaaatgaactt
cctgattttgttcagcctccaaataaggtgaagccaagaccagaactgctaaataaaaat
ccatttgagttcatcattgaagttatgtgtcatataaaaaaaaacattttgcatgaagtg
ctaatttctttgcccttttcttatgcatataagttactaaattatatcaagacgtatttg
atggcattctattttttccagcgcattcaaaatgattatgggaaatttaaaatttgtgga
gatctgagtttccacgtcgagtattctatcaacatcgtcctgtccattgtgaatatatat
cggaaccagtttttgtttgacgtgaaatttaggttccttctgtacgagctgcatcaactc
attattccgcacctgaggagatccctcgatcagtgtgccttcaaccaaagcaccctcaac
tttatgctccatggtatggacgacgaggaggtaaatgttgatggagcattgtag
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