Pseudomonas koreensis: AYO71_21190
Help
Entry
AYO71_21190 CDS
T04647
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYO71_21190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_21190
Enzymes [BR:
pkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYO71_21190
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AYO71_21190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMT89936
LinkDB
All DBs
Position
4735434..4738883
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRARLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGVGRERFPAHALPDL
AIEAKATQPLAALAGFLEEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLLLDDPALALVAESPLFGQRVMQRRRREKRSDVSNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDS
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQATIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSAVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEKLGIKKV
DGGPQGGRIEFEAQTPVDPMTLIKLIQTQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgctactccctgccgaagcaggtaaacagcactggggcaat
ctgcccggtgccgccctcagcctggcgattgccgaggctgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccaaagcgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcccgtactgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtatcgcctgccggaa
ctggcccacggcgtgctggtggttccgatcaccaccgccctgcatcgcttggcgccgacc
aagttcctgctcggcagcagcctggtgctcgatatcggccagaagctcgacgtcgaacag
atgcgcgcgcggctcgaagccagcggctatcgctatgtcgacacggtgtacgagcacggc
gagttcaccgtacgcggcgcgctgatcgacctgttcccgatgggcagcaaactgccgtat
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcacgttcgatccggaaacccag
cgttcgatcgacaaggtcgagtcggtcaagctgctgccggcccgcgagtttccattgcag
aaagatgcagtcacccgcttcaaggcgcgtttccgtgagcgctttgacgtcgattttcgt
cgctgcccgatctttcaggatttgagcagcggcatcactccggccggcatcgagtactac
ctgccgctgttcttcgacgaaacttcgacgctgttcgattacctgccccaggacacgcaa
gtgttctcgctgccgggcatcgagcaggcggcggaaaacttctggaacgacgtgcgcaat
cgttacgaagaacgccgcgtcgatccatcgcgtcctttattgccaccggccgaattgttc
ctgccggtggaagactgcttcgcgcgcctgaagaactggccacgggtcgttgccagtcaa
caggacgttgaaagcggcgtcggccgtgagcgcttcccggcacatgcgctgcccgatctg
gccatcgaagccaaggccacgcaaccgctggcggcgctggccggtttcctcgaagaattc
cccgggcgcgtgctgttcaccgctgaatcggcgggtcgtcgcgaagtcctgctggaactg
ttggaacgtctgaagctgcggccgaaaaccgtcgacagctggccggacttcgttgccagc
aaggatcgtctggcgatcaccatcgccccgctcgacgagggtctgctgctcgacgacccg
gcgctggcgctggtggcggaaagtccgctgttcggccaacgggtcatgcaacgtcgtcgt
cgcgagaagcgcagcgacgtcagcaacgatgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcgggcgctacctgggcctgacgatt
ctggaaatcgacaatcaggccgccgagttcctcaccctcgaatacgccgagaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcgcgctacaccggcagcgacgattcg
ctcgcgccgctgcaccgcctcggctcggaaacctggcagaaagccaagcgcaaggccgcc
gagcaggtgcgtgacgtcgccgccgaattgctcgacatttacgcccgtcgtgccgcccgt
gaaggttacgccttcgccgacccgaaggccgattacgccaccttcagcgccggcttcccg
ttcgaggagacgccggaccagcaagcgaccatcgaggcggtacgcgaagacatgctcgcg
ccgaaaccgatggatcgtctggtctgcggcgacgttggcttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgccgtgcacggcggtcggcaggtggcgattctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagtcgcttcaagtcggccaaggaagtcaacgcggcgatcgccgat
ctggcggaaggcaagatcgacatcgtcatcggcacgcacaaactgctgtccgatgatgtg
aagatcaaaaacctcgggctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatccttaccctgaccgcgacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgatctgtcgatcatcgccacg
ccgccagcgcggcgcctgtcggtgcgcacttttgtaatggagcagaacaagagcgcggtc
aaagaggccctgctgcgtgaactgctgcgtggcggtcaggtttattacctgcacaacgat
gtgaagaccatcgagaaatgcgccgccgatctcgccgaactggtgccggaagcgcgcatc
ggtatcggccacgggcagatgcgcgaacgtgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgaacgcgccgacaagttcggtctggcccagctgcaccag
ttgcgtggtcgtgtcggtcgcagtcaccaccaggcttacgcctacctgctgacaccgcca
cgccagcaaatcacttcggacgcggaaaaacgtctggaagcgatcgccaatacccaggac
ctcggcgccggtttcgtcctggccaccaacgacctggaaatccgtggcgccggcgaactg
ctcggcgacggtcagagcgggcagattcaggccgtcggtttcaccctgtacatggaaatg
ctcgaacgcgcggtgaagtcgatccgcaagggcgagcagccgaacctcgatcaaccgctt
ggcggcggtccggaagtcaatctgcgggtgccggcgctgattccggaagattatctgccg
gatgtgcatgcgcggctgattctgtataaacgcatcgcctcggccaccgacgaggaaggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgttgccggagccgaccaag
aacctggtgcggatcaccgcgctgaaattgcaggcggaaaagctcggcatcaagaaagtc
gacggcgggccgcaaggcggacgcatcgagttcgaagcgcagacgccggttgacccgatg
accctgatcaagctgatccagacgcagcccaagcgctacaagttcgaaggcgcgacgatg
tttaaattccaggtgccgatggagcgcccggaagaacgtttcaatactgtcgaggcgctg
tttgagcgtctcatcccgaaatccgcttga
DBGET
integrated database retrieval system
