Parvibaculum lavamentivorans: Plav_2977
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Entry
Plav_2977 CDS
T00580
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Plav_2977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pla03400
]
Plav_2977
Enzymes [BR:
pla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Plav_2977
DNA repair and recombination proteins [BR:
pla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Plav_2977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABS64584
UniProt:
A7HXF1
LinkDB
All DBs
Position
complement(3172901..3175438)
Genome browser
AA seq
845 aa
AA seq
DB search
MSRKSTSSLETYWAKRHFDETPEPRGKKARRKGHRYSIQMHHTRRLHYDLRLELDGVLKS
WAITKGPSLDPSVKRLAVRTEDHPVDYIAFEGNIPEGHYGAGTVLLWDRGEWQPIGDPHE
GLKKGKLAFEIHGERLKGRWALIRFKGERDPKRENWLLIKERDDVASSSKDPVEEYKTSV
SSGRGKKEVSDAPDRVWEDGKAKKAKSKRVTSKGPKHPLPGFVEPALATLVDEPPSGDDW
LFEMKYDGYRALASVTGEEVRIFTRSGLDWTERYGALGSAFSDLGLDGALIDGEIVVTDA
KGRSSFSDLQRTLKGEKKGRLSFFAFDLLHSEGEDLRKRPLIERKKQLKALLGAAGKKGP
VYYTDHVEGEGEMMLEALCTRGFEGVIAKRADRPYRSGRGKSWLKIKCQHEQEFVIVGWS
PSERGRAFSSLLLALREDGELRYAGRVGTGFSEADLNALSKRFASLARRTSPLKGDVPAE
IRRNVRWLRPELVAQIGFAEFTHDGAVRQARYLGLREDKPASAVTRESAVPVEKIEKMTA
TDKTSKDADDDAVIEGVRITHPDRILFPEQGVTKLALARYMQKAAPLMLPHLANRLLSLV
RCPQGPQKKCFFQRHAGSSLPEGFKELPVKGSKERQDYLYLTDAKGLVAAAQMGVLELHL
WGSHIDDVERPDRIVFDLDPDPDLPFDTVIEAARRMRNVLEALELQSYPMLTGGKGVHVV
APLVRRHEWPVVKAFTRALAERLEADAPERYVAKMTKSKRTGRIFIDYLRNDRSSTAIAP
YSPRARKGAPVAWPVTWEELDEANSGGDVTIETAFAKRRTDPWKGYGSLRQSLKASALRA
LDVDA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcaagagtacgtccagcctcgaaacctattgggcgaagcgtcattttgacgaa
acacctgaacctcgcggcaagaaagcgcggcgcaagggccatcgctattcgatccagatg
catcatacccgtcggctgcactacgaccttcgcctggaactcgatggcgttctgaagagc
tgggccatcacgaaaggtccgagcctcgatccttctgttaagcgcctcgccgtccgcaca
gaggatcacccggtcgactacatcgcctttgagggaaacatcccggaaggtcactacggc
gccgggacggtgcttctatgggatcgcggcgaatggcaaccgatcggcgatccgcatgaa
ggcctgaagaaaggcaagctcgcttttgaaattcatggcgagcgactgaaaggacgatgg
gcactcatccgtttcaagggcgaacgcgacccgaagcgggaaaattggctcctcataaag
gagcgcgacgatgtcgcaagcagcagcaaagaccctgtcgaagaatacaagacaagcgtc
tcttctggtcgcggcaaaaaggaagtctcggacgcacccgatcgtgtctgggaagacggc
aaggcgaagaaggccaagtcgaagcgggttacatcgaagggcccgaaacatcctttgccc
ggctttgtcgaaccagccctggcaacgctcgtggatgagccaccgtcaggagatgattgg
ctgttcgaaatgaaatacgacggataccgcgctctcgcctctgtaacgggagaagaggtc
cgcattttcacccgaagcggcctcgattggactgaacgctacggcgcacttggttctgcg
ttttctgaccttggtcttgatggcgcgctgatcgatggtgagatcgtcgtcaccgacgcg
aaaggccgctcgagcttcagcgatctgcaacgcacattgaaaggtgagaaaaagggacgc
ttgtcttttttcgccttcgatctcctccattccgaaggcgaagatctgcgcaaaagaccg
ttgatcgaacgcaagaagcagctgaaagcactgctcggtgcggccgggaagaaaggcccc
gtctattacaccgaccatgtggaaggtgagggagagatgatgctcgaagcgctctgcacg
cgcggcttcgaaggggtgatcgccaaacgcgccgaccggccgtatcgctccggacgtgga
aagtcctggctgaagatcaaatgccagcatgaacaggagttcgtcattgtcggttggtct
ccctcggagcgcggccgggcattctcctcgctcctgctggctcttcgggaggatggcgag
ctacgctatgcaggcagggtcggcacaggcttttccgaggccgacctgaatgcactttca
aagcgtttcgcctctttggcgcggcgcacctcaccgctcaagggcgatgtgcccgccgag
atcaggcgcaacgtgcgttggctgcggcccgaactcgtggcccagatcggatttgccgag
tttacccatgacggcgccgtgcggcaggcgcgctacttgggcttgcgcgaggacaagccc
gcaagtgccgtcacgcgcgagagcgccgttccggtggagaagatcgaaaaaatgacagca
accgacaaaacctcgaaagatgccgacgacgacgcagtcattgaaggtgtccgtatcact
catccggaccgcattctttttccagagcaaggcgtcaccaaactcgcgctcgcgcgatac
atgcaaaaagccgcaccgcttatgctgccgcacctggcaaaccgcctgctcagtctcgtg
cgttgcccgcagggaccgcagaaaaaatgtttcttccagcgacatgccggctcgagcctt
cccgaaggcttcaaggaactgccggtaaagggatcgaaagaacggcaggactatctctat
ctgacggatgccaagggccttgtcgccgccgcacaaatgggtgtgctggagctccatctg
tggggctctcatatcgacgatgtcgaacgccctgacaggattgttttcgatctcgatccg
gaccccgatctccctttcgacacggtgatcgaagccgcgcggcgaatgcgcaatgtgctg
gaagctctggagctgcagagttatcccatgcttaccggtggcaagggcgtccacgtcgtc
gcgcctttggtgcgccgccatgaatggccggtcgtgaaggctttcacgcgtgcgctcgct
gagcggctggaggcagacgccccggagcgttatgtcgcgaaaatgaccaaatcaaagcgc
accggccgcatattcatcgactacctgcgaaatgaccgctcatctaccgccatcgcgccc
tactcgccccgcgcacgaaaaggagcgccggtcgcatggccggtaacctgggaggaactc
gacgaggcgaactccgggggcgacgtgacgatagaaactgcctttgccaagcgccgcacc
gatccatggaagggttatggctcccttcgacagtcactcaaggcatcggccttgcgtgca
ctcgatgtcgacgcctga
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