Poecilia latipinna (sailfin molly): 106960169 Help Entry 106960169         CDS       T08005                                  Symbol lig1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism plai  Poecilia latipinna (sailfin molly) Pathway plai03030   DNA replication plai03410   Base excision repair plai03420   Nucleotide excision repair plai03430   Mismatch repair Brite KEGG Orthology (KO) [BR:plai00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     106960169 (lig1)    03410 Base excision repair     106960169 (lig1)    03420 Nucleotide excision repair     106960169 (lig1)    03430 Mismatch repair     106960169 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:plai03032]     106960169 (lig1)    03400 DNA repair and recombination proteins [BR:plai03400]     106960169 (lig1) Enzymes [BR:plai01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      106960169 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      106960169 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      106960169 (lig1) DNA replication proteins [BR:plai03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     106960169 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      106960169 (lig1) DNA repair and recombination proteins [BR:plai03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      106960169 (lig1)    NER (nucleotide excision repair)     Other NER factors      106960169 (lig1)    MMR (mismatch excision repair)     Other MMR factors      106960169 (lig1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  106960169 NCBI-ProteinID:  XP_014908623 Ensembl:  ENSPLAG00000020049 UniProt:  A0A3B3VV25 LinkDB All DBs Position Unknown AA seq 1002 aa AA seqDB search MQRSIASFFQPRTKVKDSQKKTADEPVNKPIKSPLKVQNGVQEADSPIKKVAKRSRQILD SDEDEAPLVKEQGDKGAPAKTEKTDDVSQAVPTPLSPTPAPSTPITLETPETSASSTSSG SPSSPSSTSTSRIVKRKTARKMFPKRKLDESESRKGESEVVEEQGQQNKRPRLESGVSSA ENTDEPMEEGAKEEKVEKPVAEANSPDEEVGNEKTEGEKAKKEEEQVEEKISDEKEKKAE GAEKKNEAKEKTDDEKRPSVAKDKVFEKDTKDTGSPKSQMEEKKQKEAKEQKDKESAKKT PISSFFAPRKAAVKTEKPEKNKGEKKTSAERKSSDEEQRDAKGESASGETDYNPSRPNYH PVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLC LNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRTMF QPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGL AEQSVLAALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYD VIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERA QIHILESGEVRIFSRNQEDNTSKYPDIISRLPKVKKDSVVSCVLDTEAVAWDREKKQIQP FQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGEFL FARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVG DTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKE HILAKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGISLRFPR FLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY NT seq 3009 nt NT seq  +upstreamnt  +downstreamnt atgcagcggagcatcgcatcgttttttcagcccaggaccaaggttaaagacagccagaag aaaactgcagatgaaccagtgaacaaacccattaaaagccccttgaaggtgcagaacggc gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatcctggac agcgacgaagacgaggcgccgcttgtaaaagaacaaggcgacaaaggagctcccgctaaa accgagaagacggacgatgtgtcccaggccgttcccaccccgttgtctccaacgccggcc ccatccacacccataaccctggaaaccccggagacgtcggcctcctcgacgtcttcaggg tcgcccagttctcccagttccacctccacgtctagaattgtgaaacgcaaaactgcgagg aagatgttccccaagaggaagctggatgagagcgagagtcggaaaggggagtcggaggtc gtggaggagcagggtcagcaaaacaaacgaccccgcctggagagcggtgtcagcagtgca gagaacaccgatgaacccatggaggagggagcaaaggaagaaaaggttgaaaagccagtg gctgaggctaacagcccagacgaggaggtggggaacgagaaaacagaaggagagaaggcc aagaaggaggaggagcaggtagaagaaaagatctctgatgagaaagaaaagaaagctgag ggggcggaaaagaaaaatgaagcaaaggagaagacagatgatgagaaaaggccctctgtc gccaaagacaaggtgtttgaaaaggacacgaaagacacagggagcccaaaaagtcaaatg gaagaaaaaaagcagaaagaggcgaaggagcagaaagataaggagtcggccaagaaaacc ccaatcagcagtttctttgctcccagaaaagcagcagttaagacagagaaaccagagaag aacaaaggagagaaaaagacgagtgcagagaggaagagctccgatgaggaacagagagat gcaaaaggggaatcagcctcaggagagacggactacaatccatccagaccaaactaccat ccggtggaccacgcctgctggaaacaaggccaaaaagtgccgtacttggcagtggctcgc acctttgagaaaattgaagaggactctggcaggctgagaaacatcgagacgctgtcgaac ctgctccgctcggtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgt ctgaaccagctcggccccgcctaccttgggatggagctcggcgttggggagacggtgctg atgaaagccgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggaggcgcag gagaaaggagatttgggcctggtggccgagagttcccgtagcaaccagcgcaccatgttc cagccggccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgccagcatg agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcgtgc cgcttctccgaggcccgctacatagtcaggtccctggctgggaagctgaggattggcctc gctgagcagagtgtcctcgccgcgctgagccaggccgtctgcttgaccccgcctggacaa ggtttccctcctgctgtgattgatgcagggaagggcatgagcgctgagagcaggcgggcc tggatcgaagagaagagcctcattctgaaacaaacatactgtgaaatgccaaattatgac gtcatcatcccagttttactgaaagcaggcatcgaccagctgcccaaacactgcaaactc actccaggagtcccgctgagacccatgttggctcaccccaccaagggtgtcggcgaggtg atgaagaggtttgacgaggcggcgttcacctgcgagtacaaatatgatggagagcgggca cagattcacattctggagagcggcgaagttcggattttcagccgcaaccaggaagacaac accagcaaatacccagatatcatctcgcgcctccccaaggtgaagaaggactctgtagtg tcttgtgttctggacacggaggcggtggcctgggatcgagagaagaaacagatccaaccc ttccaagtcctcaccactcgtaagagaaaggatgtggacgcctccgagatcaaagtccaa gtgtgtgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcgacagccg ctgtgtcggcgtcgggagctgctgagagagagcttcacagaggtggagggagagtttctg ttcgcccgttccatcgactctcacgacactgacgccatcgcagagttcctggagcagtcc gtccgagactcctgcgagggcctgatggtgaagactctggagaaggatgcgacctacgag attgccaaacgttctcacaattggctcaagttaaagaaggactacctggacggtgtgggc gacacggtggacctctgtgtgatcggtgcctacctgggaaagggaaaacgaacgggcacc tacggaggcttcctgctggcctgctacgatgaagacaatgaggagtttcagtcagtctgc aagatcgggacaggctttaaggatgaagatctggagcagcattacaagtttttaaaggag cacatcctggccaagccccgcccctactaccgcgtggaccaatcagctgagcccgacgtg tggctggacgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcgcctgtc tacaaggctgccatgggaatggtggatgcagagaaaggcatttctctgcggttccctcgc ttccttcgcatcagagacgacaagaagcccgaggacgccaccaccggagctcagatcgct gatttgtacaagaagcagcagcagattcagaatcaaggggagaaagctgacccggaggac tactactga

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