Poecilia latipinna (sailfin molly): 106962276
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Entry
106962276 CDS
T08005
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai03013
Nucleocytoplasmic transport
plai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106962276
03015 mRNA surveillance pathway
106962276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plai03019
]
106962276
Enzymes [BR:
plai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106962276
5.6.2.5 RNA 5'-3' helicase
106962276
Messenger RNA biogenesis [BR:
plai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106962276
mRNA cycle factors
Common to processing body (P body) and stress granule
106962276
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
nSTAND3
ATPase
Helicase_RecD
AAA_16
SRP54
DEAD
UvrD_C_2
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
106962276
NCBI-ProteinID:
XP_014912066
Ensembl:
ENSPLAG00000018155
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSVEAYGPNSQTLTFLDTEESELLGADTQGSEYDFIDFTLPSQTQTQGQTHSQLDNQVNG
SDVVLQNGDDPVVKASQLLAELNFEEDEEDAYYSKDLPLHACCCSVFYSLHFCSYCGIHD
PACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRN
VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQE
QLRARQITAQQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLV
KLEADYDKKLKESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDL
APPWKGIGHVIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTF
AVDETSVSGYIYHKLLGHEVEDVLIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQWPLSLI
QGPPGTGKTVTSATIVYHLARQGTGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSRE
AIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNA
DVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGPVV
MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR
VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGGKPDQI
GIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGI
GFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL
MQFNKPRKLVNAINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNVYFQTHDQIGMIC
SGLGPMSSMNIPIPINLVMPPIPPPGYLGQLNGPSGGRGESTKNKSASTGGSGTRGARQR
NRGDVGIDGVQHGGHMTGSQASQDQGSQPFSQGPLTQGHISMSQPSQMSQPGLSQPELSQ
DSYLGDEFKSQFDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgaactcgcagaccctgacgttcctggacaccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcatcgatttcaccttg
ccaagccaaacgcagacgcagggccagacccacagccagttagataaccaggtcaacggt
tcggatgttgtgctgcagaatggagatgaccctgtggtgaaagctagccagctccttgca
gaattaaactttgaggaagatgaggaggatgcttactatagcaaggacctcccattgcat
gcctgctgttgttctgttttttattccttgcatttctgtagttactgtggaattcacgat
ccagcctgtgtggtctactgcaacaccagcaagaaatggttctgtaatggccgtgggaat
acatctggcagccacatcgtgaaccacctggtgagggccaagtccaaggaggtgaccctg
cacaaagatgggcctctgggagagacggtgttggagtgctacaactgtggctgccgcaac
gtcttcttgctgggcttcatcccagccaaggccgactcagtggtggtgttgctgtgcaga
cagccgtgtgccagtcagagtagcctgaaggacattaactgggacagctcccagtggcag
ccactcatccaggaccgctgcttcctgtcttggctggttaaaatcccctcagaacaggag
cagctccgggcccggcagatcaccgcccagcagatcaataagctggaggagctgtggaag
gaaaatcccactgctactctggaggacctggagaagcctggagtggacgaggagccacag
cacgtcctcctgcgttacgaggatgcctatcagtaccagaatatctttggacctcttgta
aagctggaggctgactatgataagaaactgaaagagtcacagactcaagaaaatataacg
attagatgggacctgggcctgaataaaaaaaggattgcttatttcacccttcccaagact
gactctgatatgcgactaatgcagggtgatgaaatctgcctcagatataaaggagacctg
gcccctccatggaaaggcattggacatgtcatcaaagttcctgacaactacggcgatgag
attgccattgagcttcggagtagtgccggagctccggtggagatccctcataacttccag
gtggactttgtgtggaagtccacctcctttgacaggatgcagagcgccctgaaaacattt
gctgtggatgagacttcagtttctggctacatctatcacaagttgctgggacacgaggtg
gaggacgtgctcattaagtgccagctgcctaagcgcttcactgctcaaggcctgcctgac
ctcaaccactctcaggtctatgctgtgaagacagtgttgcagtggcccctcagtctgatc
cagggtccccctggcacagggaagacggtcacctcagccaccatagtgtaccatctggct
aggcagggaaccggaccagtgctggtgtgtgctcctagtaacattgctgttgatcagctg
actgagaagattcaccagacggggctgaaggtagtgagactttgtgccaaaagcagggaa
gctattgattctccggtgtccttcctggctctgcacaaccagacccggaacatggaaagc
atgccggagctgcagaaactccagcagctgaaggatgagaccggagagctgtcgtcctct
gacgagaagcgctacagagctctgagacgcactgctgagcgggagctgctcatgaatgcc
gatgtgatctgctgcacgtgtgttggagcaggagatccccgtctggctaaaatgcagttt
cgatctatcttgattgatgaaagcactcaggccacagaaccagagtgcatggtgccggtt
gtccttgggaccaaacagctgattctggtgggggatcactgccagctaggacctgtggtg
atgtgtaagaaggcagcaaaagcaggcctgtcccagtctctgtttgagcgccttgtggtt
ctgggcatcaggcctatccgtctgcaggtccagtaccgcatgcacccagccctcagcgcc
ttcccctccaacatcttctatgagggctccttgcagaatggagttactgctgctgatcgg
gtgaaaaaaggcttcgatttccagtggccacagccagacaagcccatgttcttctatgtc
acccaaggccaagaggagatagcgagctctggaacatcctatctgaacagaactgaggct
gccaatgtggagaaaataaccacaaggttactgaaggctgggggtaaacccgaccagatt
ggcatcatcactccctatgaaggacagcggtcctacctggtccagtacatgcagttcagt
ggctccctccataccaagctctaccaggaagtggaaatcgccagtgtggatgccttccaa
ggcagagagaaggatttcatcatcctctcctgtgtgagagccaatgagcaccagggcatt
ggcttcctcaatgaccccagacgtctcaacgtggcactcaccagggcccgatacggagtg
atcattgtggggaatccgaaggccctttccaagcagcctctgtggaaccacctgctcaac
tattacaaggagcagaaggttctggtagaaggcccattgaacaacctgagagagagcctc
atgcagttcaacaagccacggaagctggtcaatgccatcaacccgggtggccgcttcatg
agcacagccatgtatgatgccagggaggcgctgattcctggctctgtttatgaccgcagc
agcaacggccgaccttccaacgtgtacttccagactcatgaccagatcggtatgatctgc
tctggactcggtccaatgtcgtccatgaacattcctattcccatcaaccttgtgatgcct
cctatccctccacctggttatttaggacagctgaacggcccctctggaggtcgtggtgaa
agcacgaagaataaatcagccagcacaggcggcagtggaactcgaggtgctcgtcaaaga
aaccgtggagacgtgggaatagacggagttcagcacggaggtcacatgactggcagccag
gctagccaggaccagggctcccagccattctcccaggggcccctcacacaaggccacatc
agcatgagtcagccctcccagatgagccagcccgggctctcccagcctgaactgtcacag
gacagttacctaggagatgaattcaagtcccagtttgatgtggctctgtcccaggactcc
acataccagggggaacgggcctaccaacatggagtgactggactgtcccagtactag
DBGET
integrated database retrieval system
