Pseudomonas lalkuanensis: FXN65_16860
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Entry
FXN65_16860 CDS
T07120
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plal
Pseudomonas lalkuanensis
Pathway
plal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FXN65_16860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plal03019
]
FXN65_16860
03009 Ribosome biogenesis [BR:
plal03009
]
FXN65_16860
Enzymes [BR:
plal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FXN65_16860
Messenger RNA biogenesis [BR:
plal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FXN65_16860
Ribosome biogenesis [BR:
plal03009
]
Prokaryotic type
rRNA helicases
FXN65_16860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
UTP25
Motif
Other DBs
NCBI-ProteinID:
QEY63649
UniProt:
A0A5J6QSF0
LinkDB
All DBs
Position
complement(3617126..3618793)
Genome browser
AA seq
555 aa
AA seq
DB search
MTQELGTFAALGIHPNVLAAITAVGYEEPSPIQAQSIPVILAGHDMIGQAQTGTGKTAAF
ALPILSRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGLNVVAVYGGAPMGPQLK
ALRQGAQVIVATPGRLCDHLRRDDKMLATVQQLVLDEADEMLKLGFMDDLEVIFEALPES
RQSVLFSATLPPSIRSIAERHLRNPQHVKIAAKTQTVARIEQAHLMVHADQKTPAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQQVLDARIKKLNTSLTPLVAEADAKYGDLLDRLVADIGCTPRAL
AAALLQRATNGQALNLADVEREQPLVPSFQPRERRERDGAERGEYRERRAPMPLAEGRVR
CRTALGTRDGIAAKNLLGAILNEGGIAREAIGRIQIRETFSLIELPEDGLDRLLGKLKDT
RVAGKQLKLRRYRED
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaactcggcactttcgccgcgctcggcattcatcccaatgtactggccgca
atcactgcggttggctatgaagagccgtcccccatccaggcccagtcgattccggtgatc
ctcgccggtcacgacatgattggccaggcccagaccggtaccggcaagaccgcagccttc
gcgctgccgatcctgtcgcgtatcgatccggccaaacgtgagccgcaggcgctgatcctg
gcaccgacccgcgagctcgcactgcaagtcgctaccgccttcgaaacctacgccaagcag
atgcccggcctgaacgtggtcgccgtctacggcggcgcgcccatgggtccccagctcaag
gccctgcgccagggcgcccaggtgatcgtggctacccccggccgcctgtgcgaccacctg
cgtcgcgatgacaagatgctcgccaccgtgcagcaactggtgctggacgaagcggacgag
atgctcaagctcggcttcatggatgacctcgaagtgatcttcgaagccctcccggaaagc
cgccagagcgtgctgttctccgccacgttgccgccgtcgatccgctcgatcgccgagcgt
cacctgcgcaacccgcagcacgtcaagattgctgccaagacccagaccgtagcgcgcatc
gagcaggcccacctgatggtccacgccgaccagaagaccccggctgtcctgcgtctgctg
gaagtcgaggaattcgacgcgctgatcgccttcgtgcgtaccaagcaggccaccctggac
ctcgccagcgccctggaagccaagggctacaaggccgctgcgctgaatggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgagtcgctcaaggacggtcgtctggacatcgtggtc
gccaccgacgtggctgcccgtggtatcgacgtaccgcgcattacccacgtgttcaacgtg
gacatgccctacgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgatggccgtgcgctgctgctggtgaccccgcgcgagcgccgcatgctgcaggtgatc
gagcgtgtgactggccagaaggtcgctgaagtgcgcctgcccaacgcccagcaagtgctg
gatgcgcgcatcaagaagctgaacaccagcctcaccccgctggtggccgaggccgacgcc
aagtacggcgacctgctggaccgcctggtggccgatatcggttgcaccccgcgtgccctg
gctgccgcactgttgcagcgtgccaccaacggccaggcccttaacctggccgacgtggag
cgcgaacagcccctggtgccgagcttccagccccgcgagcgccgcgagcgtgatggtgcc
gagcgtggcgagtaccgcgagcgccgtgcgccaatgccgctggccgaaggccgtgtacgc
tgccgtaccgcgctgggtacccgcgacggcatcgccgcgaagaacctgctgggcgccatc
ctcaacgagggcggtattgcccgtgaggccatcggtcgcatccagattcgcgaaaccttc
agcctgatcgagctgccggaagacggcctcgaccgcctgctgggcaagctcaaggacacc
cgtgtggccggcaagcagctcaagctgcgccgctatcgcgaagactga
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