Plantibacter sp. PA-3-X8: EAO79_10685
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Entry
EAO79_10685 CDS
T05731
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plap
Plantibacter sp. PA-3-X8
Pathway
plap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAO79_10685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plap03400
]
EAO79_10685 (mfd)
Enzymes [BR:
plap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAO79_10685 (mfd)
DNA repair and recombination proteins [BR:
plap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EAO79_10685 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AZH83315
UniProt:
A0A3G8VS69
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All DBs
Position
2243166..2246777
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AA seq
1203 aa
AA seq
DB search
MTLQGLTHALRRAATIDDALAYAGKSADFSVIDGLRAPLLAALMDERGRQGAAQAALVVT
ATGRDSERLRSALSDLMPEAEIVEFPAWETLPHERLSPSAEIVGRRLEALRRLGAWTGER
PFLLVASVRAALQPVADNLTETAPIELVQGGRGHDLAAIALRLVELAYTRVDMVSRRGEF
ALRGGILDVFPPVADHPYRVEFFGDEVDGIRAFSVADQRSLPEPVDAIRLPPSRELLLSP
AVRQRAAEMQHEFPSLTGILEKIAEGIAVEGMESLSPALVDRLVPITHYLPDGAAIAVVS
PERVVTRSISLAETNREFLAAAWSAATVGANAPIDLASGDFISLGALKESVTFSAPGQPA
PDHPWWTFSGFRAGPDVETLPEHLELDELLTVTVDGDTVPSFHGNVEGAIEHVADRIREG
WTVIVAARGVGLVERAADVLAEHEIAARMVDELPADPEPGVAYLLQADVEGGFELETSKL
MLLGETEFYGRTAGYDSRLVKKLATRRKNVVDPMQLRSGDFVVHQTHGIGKFVEMTQREV
SSGGRNPVKSTREYLVLEYAPSKRGYPGDKLLVPTDQLDLLTRYVGGEAPQLSKMGGSDW
SQAKSKARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLQTID
EVKADMEREIPMDRLLSGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTLLVKQHFETFQ
ERFAGFPVHLRPLSRFQSDKEAREALAGLADGTVDVIIGTHRLLTDKVHFKDLGLVIIDE
EQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFV
GPYNGKQVGAAIRRELLREGQIFFVHNRVSSISRVAADLAELVPEARIAIAHGQLGEAAL
EQVVVDFWERRFDVLVCTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERA
YAYFLYDEHKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNMLGGEQAGHIAGV
GFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSAASG
PAAKDGQIDLVIDELTDRYGEPPAQVSTLIAVSRLRQRAQRSGLSDLIAVGPNLRVTPAD
LPDSIQTRLRRMYPGAKYLAQTNTVIVPLPRVGDEPLADTDLIAWVQQFLNAIYPLPEGS
TSS
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcttcagggtttgactcacgcgcttcggcgcgccgcaacgatcgacgatgccctc
gcgtacgcgggcaagagcgcggacttctccgtgatcgacgggctgcgtgcaccgctcctc
gcggcgctcatggacgagcgcggtcggcagggtgccgcccaggcggccctcgtcgtcacc
gcgaccggccgcgactccgagcggctccgctccgcgctcagcgacctcatgccagaggcc
gagatcgtcgagttcccggcctgggagaccctgccgcacgagcgcctcagcccgagcgcc
gagatcgtcggccgacgcctggaggcgctgcggcggctcggcgcctggacgggggagcga
ccgttcctcctcgtcgcgtcggtgcgcgccgcgctgcagcccgtggccgacaacctcacc
gagaccgctccgatcgaactcgtccagggcggtcgcggacacgacctcgccgcgatcgcg
ctgcgactcgtcgaactcgcgtacacccgggtcgacatggtgtcgcggcgtggtgagttc
gcgttgcgtggtggcatcctcgacgtcttcccgccggtcgccgaccacccgtaccgggtc
gagttcttcggcgacgaggtcgacggcatccgggcgttctcggtcgccgaccagcgttcg
ctgcccgagccggtcgacgcgatccgcctgccgccgtcccgtgagctgctcctcagcccg
gccgtccggcagcgcgccgcggagatgcagcacgagttcccgagcctcaccgggatcctc
gagaagatcgcggagggcatcgcggtggagggcatggagtcgctctccccggccctcgtc
gaccgcctcgtcccgatcactcactacctgccggatggagcggccatcgccgtcgtctcg
ccggagcgcgtcgtcacgaggtcgatcagcctcgccgagacgaaccgcgagttcctcgcc
gccgcatggagcgccgcgaccgtcggtgcgaacgcgccgatcgacctcgcctccggcgac
ttcatctcgctgggcgccctgaaggagtccgtcaccttcagcgctcctggccagccggcg
cccgaccacccgtggtggacgttcagcggcttccgcgccggccccgacgtcgagacgctc
ccggagcacctcgaactcgacgagctcctcaccgtcacggtcgacggcgacaccgtgccg
agcttccacggcaacgtcgagggcgccatcgaacacgtcgccgaccgcatccgcgagggc
tggacggtcatcgtcgcagcccgtggggtcggtctcgtcgagcgcgcggcggacgtcctc
gccgagcacgagatcgcggcccgcatggtcgacgaactgccggccgacccggagcccggg
gtcgcctatctgctgcaggccgacgtcgagggcggcttcgagctggagacgtcgaagctc
atgctgctcggcgagaccgagttctacggacgcaccgccgggtacgactctcgcctggtc
aagaagctcgccacccgacgcaagaacgtcgtcgacccgatgcagctccggtccggcgac
ttcgtcgtgcaccagacccacggcatcggcaagttcgtcgagatgacccagcgcgaggtc
tcgagcggtggacgcaacccggtgaagagcacccgcgagtacctcgtgctcgagtacgca
ccttccaagcgcggctacccgggcgacaagctgctcgtccccacggaccagctcgacctc
ctcacccgctacgtgggcggcgaggctccgcagctcagcaagatgggcggcagcgactgg
tcgcaggcgaagagcaaggcgcgcaaggccgtccgcgacatcgccgtcgagctggtcaag
ctctactcggcgcgcatggcgtcgaaggggcacgccttcggccccgacaccccgtggcag
cgcgagctcgaggaggcgttcccgttcgcggagacccccgaccagctgcagaccatcgac
gaggtcaaggccgacatggagcgcgagatcccgatggaccgcctcctctccggcgacgtg
gggttcgggaagaccgaggtcgccgtccgtgccgcgttcaaggccgtccaggacggcaag
caggtcgcgatgctcgtgccgaccaccctgctcgtcaagcagcatttcgagaccttccag
gagcggttcgccgggttccccgtgcacttgcggccgctcagccggttccagtccgacaag
gaggcgcgggaggcgctcgccggactcgccgacggcacggtcgacgtcatcatcgggacg
caccgtctgctgaccgacaaggtgcacttcaaggacctcggcctcgtcatcatcgatgag
gagcagcggttcggtgtcgagcacaaggacgccctcaagaagctgaagacgaacgtcgac
atcctggcaatgagcgcgaccccgatcccgcgcacgctcgagatggcggtcaccggcatc
cgggagatgtccacgcttgcgacgccaccggaggaccgccacccgatcctgtccttcgtc
ggtccgtacaacggcaagcaggtcggtgcggcgatcaggcgcgagctcctgcgcgagggc
cagatcttcttcgtgcacaaccgggtctcgtccatcagccgcgtcgcggcggacctcgcg
gagctcgtccccgaggcgcgcatcgccatcgcccacgggcagctcggcgaggccgcgctc
gaacaggtcgtggtcgacttctgggagcgccgtttcgacgtcctcgtctgcacgacgatc
atcgagaccggcctcgatatctcgaacgcgaacacgatcatcatcgaccgcgccgacaag
tacggcctgagccagctgcaccagctgcggggtcgtgtcggtcgaggccgcgagcgcgcc
tacgcgtacttcctctacgacgagcacaagccgctctccgagaccgcccacgaccggctc
tcgaccatcgcggcgaacaacgagctcggcagcggcatgcaggtcgccctgaaggacctc
gagatccgtggcgccggcaacatgctcgggggcgagcaggccggccacatcgcgggcgtc
ggcttcgacctctatctccgcatgatcggcgaggccgtgtccaccttccgtggcgacgtc
gccgaggggcagaccgagctgcggctcgaactgcccgtcgacgcgcacatccccgaggag
tacgtcgacagcgagcggctgcggctggaggcctaccagaagctgtcggccgcgtccgga
cctgcggccaaggacggccagatcgacctcgtgatcgacgaactcaccgaccgatacggc
gagccgccggcgcaggtgagcacgctcatcgccgtgtcgcggctccgtcagcgtgcgcag
cgctcgggactcagcgacctcatcgccgtcggaccgaacctgcgggtcacgcccgccgac
ctccccgactccatccagacgcggctgcgacgcatgtatcccggcgcgaagtacctggcc
cagacgaataccgtcatcgtgccgttgccgcgcgtcggcgacgaaccgctggccgacacc
gacctcatcgcctgggtgcagcagttcctgaacgcgatctacccgctgccggagggctcg
acgtcgtcctag
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