Plantibacter sp. PA-3-X8: EAO79_14770
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Entry
EAO79_14770 CDS
T05731
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plap
Plantibacter sp. PA-3-X8
Pathway
plap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EAO79_14770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plap03400
]
EAO79_14770
Enzymes [BR:
plap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EAO79_14770
DNA repair and recombination proteins [BR:
plap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EAO79_14770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZH84012
UniProt:
A0A3G8VG04
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All DBs
Position
3126550..3128994
Genome browser
AA seq
814 aa
AA seq
DB search
MARTSGGGGQTQWVDVDGRRIQLTHLDKVLYPETGTTKAEVLAYYAAVAEHLLPHLADRP
VTRKRWVHGVGTAASPESGFFQKDLGASAPDWVQRLPIEHSDHTNEYPIVDDLATLTWLA
QLGALELHVPQWRFDRSGERRPPDRLVLDLDPGEGVSLAECAGVAGLARAVLVDMGLDPV
PLTSGSKGIHLYAALDGRQSSAEVSLVAHELARALAADEPGLVVSEMSKQRRTGRVFVDW
SQNNGSKTTIAPFSLRGRSRPTVAAPRRWEELDDPGLAQLEFPAVLERLADGEDPLRVLG
DPRPSITIRPSEHEDRLVEYRRKRDAERTPEPVPEGPPAPPAAGTPPSFVIQRHEARKLH
HDFRLEHDGVLVSWALPKGVPTDPSSNHLAVRTEDHPIEYGSFEGTIPAGEYGAGEVTIW
DAGTYELEKWRDDEVIGTLHGRAGGALGGPMRFALIRTAGGTGREAPSWLIHRMRAPGDP
PAPPVARPRGIPTPMLASVAAPGELVDDGSWAFEMKWDGIRAIASVDGSTGRVRLSSRNG
KDLTTAYPEVVEELAASLAGRAVVLDGEIVASGPDGRPDFSLLQRRMQLTAERDVERERR
RTPVRLLLFDLLALDDTDRTELPYRERRELLERTIGSGTVVQVPPTIDGSLDDALEVSRG
LRLEGVMAKELDGRYRPGRRSSTWVKFKHERMEEVVVAGWRPGRGGRSGGIGSLLLGVPG
SDGLLHYAGRVGSGFSDRELAATALRFERLGRASTALVGVPPADAADANWVEPVLIGEVR
FSEWTPDGRFRHPVWRGWRPDRTVDDLEAPDRGR
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggacgagcggtggcggcgggcagacgcagtgggtcgacgtcgacggacgccgg
atccaactcacccatctcgacaaggtgctgtaccccgagaccggcacgacgaaggccgag
gtcctcgcctactacgccgcggtcgccgaacacctgctcccgcacctcgccgatcggccg
gtgactcggaaacgctgggtgcacggcgtcggcacggctgcgtcgccggagtcggggttc
ttccagaaggacctgggcgcctcggctcccgactgggtccaacggctccccatcgagcac
agcgatcacacgaacgagtacccgatcgtcgacgatctcgcgacactcacgtggctggcg
cagctgggtgcgctcgagctgcacgtgccgcagtggcggttcgaccgatccggcgagcgc
cgaccgcccgaccgtctcgtcctcgacctcgatccgggtgagggggtgtccctcgccgag
tgcgcgggggtcgcgggcctggcgcgggcggtgttggtggacatggggttggatccggtt
ccgctcacgagtgggagcaaggggatccacctgtacgcggcgttggacggtcggcagagt
tccgcggaggtgtcgctcgtggcgcatgagctcgcgcgggcgctggccgcggacgagccg
ggcctcgtggtgagcgagatgtcgaaacagcgacgcacggggagggtcttcgtcgactgg
agtcagaacaacgggtcgaagacgacgatcgcgccgttctcgttgcggggtcggtcacgg
ccgacggtggcggctccccgccggtgggaggagctcgacgatcctgggctggcgcagctg
gagttccctgcggtgctcgagcggctggcggacggtgaggacccgttgcgggtgctcggc
gacccgcgtccgtcgatcacgatccgcccgtcggaacacgaggaccggctcgtggagtac
cggcggaagcgggacgcggagcggacgcccgagcccgtcccggaaggaccgccggcgcct
cccgctgccgggacgccgccctcgttcgtgatccagcggcacgaggccaggaaactccac
catgacttccgactcgagcacgacggcgtgctggtgtcctgggccctgccgaagggggtg
ccgacggatccgagcagcaaccatctggcggtgcgcacggaggaccaccccatcgagtac
ggcagtttcgagggcacgatccctgctggtgagtacggggccggtgaggtgaccatctgg
gacgcgggcacctacgagctggagaagtggcgcgacgacgaggtcatcgggaccctgcac
ggccgggcgggaggtgcgctcggcgggccgatgcggttcgcgctcatccggaccgcgggc
gggacgggacgggaggcgccgtcgtggctcatccaccggatgcgcgccccgggcgacccg
ccggctcccccggtcgcacggcctcgggggatccccacccccatgctcgcgagtgtcgcg
gcacccggcgagctggtcgacgacggatcctgggcgttcgagatgaagtgggacggcatc
cgtgcgatcgcgagcgtcgacggctcgacggggcgggtgcggttgtcgagccggaacggc
aaggacctcacgacggcgtacccggaggtggtcgaggaactcgcggcgtcgctcgccggc
cgtgcggtcgtcctcgacggcgagatcgtggcgtcgggtcctgacggccgtcccgacttc
tcgctgctgcagcgtcggatgcagctcaccgcggagcgggacgtcgaacgggagcgccgt
cggacgccggtccggctgctgctgttcgacctgctcgcgctggatgacacggatcggacg
gagctgccctaccgggagcgtcgcgaactgctcgagcggacgatcggatccgggaccgtc
gtccaggtgccaccgacgatcgacggctcgctcgacgatgcgctcgaggtgagtcggggg
ttgcggttggagggggtgatggcgaaggagctcgacggacgctaccgcccgggtcggcgc
agcagcacctgggtcaagttcaagcacgaacgcatggaggaggtcgtcgtggccggctgg
cgtcccggtcggggcgggcgctcgggtgggatcgggtcgctcctgctcggggtgccgggc
tcggacgggttgctgcactacgcgggacgggtcggaagcggcttcagcgatcgggagttg
gcggcgaccgcgctccgcttcgaacggctgggccgggcatcgacggccctcgtgggtgtc
ccgccggccgatgcggccgacgccaactgggtggaacccgtcctcatcggggaggtccgc
ttcagcgagtggacaccggacggacggttcaggcatccggtctggcgtgggtggcgcccc
gatcggacggtggacgacctcgaagcgccggaccgcggacgctga
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