Paenibacillus lentus: EIM92_09505
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Entry
EIM92_09505 CDS
T05914
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plen
Paenibacillus lentus
Pathway
plen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EIM92_09505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plen03400
]
EIM92_09505
Enzymes [BR:
plen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EIM92_09505
DNA repair and recombination proteins [BR:
plen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EIM92_09505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Phage_ORF5
Motif
Other DBs
NCBI-ProteinID:
AZK46382
UniProt:
A0A3S8RTX3
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All DBs
Position
complement(2124852..2125736)
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AA seq
294 aa
AA seq
DB search
MAKTTKGTIVVDGEEITISNPDKLLWPEAGITKKLYLEKLAEISPYLLRYCQNRLLTTIR
YPDGVGRKFFYQKNAPEPLPTFVHTSVHEGVDYVVLNRLPVLLWLGNLACIEFHPSLHYV
HEQLPCEWMIDLDPSQEEEPRIMEAAVYVGDILSSLGLQSVPKTSGATGVQIIVPIEYGV
TFDELRMIGHFVARYATEKYPTLFTIERLKKDRGDKIYFDYLQHYAGKTLAAPYTPRARP
AASVSTPLTWEEVRNNPHPSDFNLHNIGERLKQKGDLLADVPPQSVQLILQHLK
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacaacaaaaggcacgatcgtcgtagacggcgaggaaattacgatatccaat
cccgataagctgctgtggccggaagcaggaataacgaaaaagctgtacttggagaagctg
gcggaaatttcgccctatctgctgcgttattgccagaaccgtcttcttaccacgatccgt
tatcccgatggggtggggcgcaaatttttctatcagaaaaatgcgccggagcctttaccg
acattcgtgcacacttccgtgcatgaaggtgtcgattacgtggtgttgaatcgtctgcca
gtattgttgtggctgggcaatttggcatgcattgaattccatccatcactgcattatgtt
cacgagcagctgccctgtgaatggatgatcgacttggatccttcgcaggaggaggaaccg
cgcattatggaagctgctgtctacgtaggagacatattgagctccctaggtcttcaatcc
gtaccgaaaacttctggagcgaccggcgtacagatcatcgtgccgatagaatacggcgtc
accttcgacgagcttcggatgatcgggcactttgtcgcccgttacgccacggagaaatat
cccacactctttacgatcgaacgattaaagaaggatcgcggcgacaaaatctattttgac
tatttgcagcattatgccggaaaaacactggccgccccctacaccccccgggcgcgtcct
gccgccagtgtatctacaccgctgacctgggaagaggtgcgcaacaatcctcacccctcc
gatttcaacctgcacaatatcggggaacgcctcaaacaaaaaggggatttgctggcagac
gttcctccgcaatctgttcagcttatcctgcagcatttgaaatag
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