Plectropomus leopardus (leopard coralgrouper): 121952171
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Entry
121952171 CDS
T07454
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121952171 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plep03021
]
121952171 (pcf11)
03019 Messenger RNA biogenesis [BR:
plep03019
]
121952171 (pcf11)
Transcription machinery [BR:
plep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121952171 (pcf11)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121952171 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
SHOCT
Motif
Other DBs
NCBI-GeneID:
121952171
NCBI-ProteinID:
XP_042354622
LinkDB
All DBs
Position
13:649650..668621
Genome browser
AA seq
1612 aa
AA seq
DB search
MDCLLINGYGIDQARVGLPGSRGSKMEDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSTEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYLLDVRVNSMDPAWPIKPLPPTVNASIHVNPK
FLKQSEEGSPPQPASAQPSPPQPPPAAPAAPAPPPAAAAVSQSSLTQEQLIRQQLLAKQK
QLLELQQKKIELELEQTKAQLAGGFVMPTPTPVAPSTPPKTGSQTAPVVRPWVPVGQTQT
DAKVPTRDPRLNRSAPPAASQPKEQPAGKKDGAATPEKSTRPEKARTPKKEASEDKDKSK
SKSPSPLAKSVPSKTKQPEAEKSADSTKKDPRLKKRTQDKSGDAKDDEQKEKKRCTEKKE
REGAARGPDRGSDRGSDRGPDPQRLHKGKLVNGSVTKHDRDEPADKPEFKTGGNARTHAR
KRTRSRSRSRSPTASPKRKDRRSPKSRARSSSLSPSPSHKASKPRRACADEPDHGKPRDP
RPAPKKNQSESRRSKRPAEDRHSESRESHSPRSHDAGGKDAKDAPHRWRSGWEENKHTKL
PEEPHLKPSAPQRHKQHSGPPRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKR
LESGEITEEDFLNMAHKIKHFFQYQEEKQQRSDSWDDSADFPAKKPPLLTTPAPAALPRP
LEDMDPAELSYYEHKSKLRKTQVTHRNHGEEWEAEESPEEGEDSGQGEKTGGGRGAGHPP
SHKYSRVPRDRQGERGSKEREEPRAPLGPMMIEEYHHGAKEFPPPLKSLPGLRFRRRADP
RESSEREWTSPLTERQREEQKSGYDAPRRFGPPADSRLADPRRPEGAPPAGATVLRNCPS
PAGVEAPRFERERLSPLHQKDSAEMSPVPRFESPNSEHSDDGPLEAPPLPPPPKSILKVP
GRSGPLSSVRQHSDXPGHTPPHDGGHPPARYEGPGHMGPSRPHAPGWYEGSGPVRYEDSS
RFEAPHHAGPSRFDGGPPHHNLPERFEGPHMSLGPVRGGDSISRLDGPPHPQGPGRFDGP
ISQQPPVRFEGPIQRFEGPLRFDNNMALGPGAGPIGFQQPRPLRFDGPPNQMGPMRFENP
SHMRFDGPVQPGPRFDLPNVAHQGGPPLYEGPLRFPQHNLQPPMRPLAPPIYDSPLGPQQ
NFNMGPQRFPEPLNPQFQTGPMAFPAGPNLQPGGSFNMQPGPPFSQPGPXPFYNPAAPAV
SMPQPVNLLGNPSQPFLPQSSAPFTQTPQVVPTENHFGQVDVNDLLTKLISTGIIKPSQP
DAAPAPGSESASVASAAPPAVEEEEEEAEEAEEDEDVDVPDLTSFSLDDMKLRYESVVTK
LYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAGKVASKKITHRRWYYTLRDWIEFEE
IADLEERAKSQFFEKENEEEVQKSQAXAKEKEFQSVKATKDQVGESCEICQEPFETYWVE
EEEDWFLKNAVRVDDKNFHPACFEDYKNTSYLDVTPSPNKLLSEHPLSAFIKTEAEEEGS
SCAVAATAAASASAATASVKQEVESEASELPAVKKEEEEVLTDEVQCAESRQ
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcaatggttatggtatcgatcaggctcgcgtaggtttgcccggg
tcgcgcggctcaaagatggaggacaaagcggcgcgggaggacgcctgccgggagtaccag
tcctctctggaagacctgacgttcaacagcaagccgcacatcaacatgctcaccatcctg
gccgaggaaaacctcaacttcgccaaggatatcgtggcaattattgaagcgcaaatcagc
aaggccccctccaccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagctgcgctccacgtgggac
gacgtgttcccgctcaagaagctgtacctgctggacgtgcgggtcaactccatggacccg
gcgtggcccatcaagccgctgccgcccaccgtcaacgccagcattcacgtcaacccaaag
ttcttaaagcagtcggaggaggggtctcccccgcagcccgcctccgctcagccttcgccg
ccgcagcctccgccggcggcaccggcggcgcccgctcccccgccggccgccgccgccgtc
agccagtcgagcctgactcaggagcagctgatccgacagcagctgctggccaaacagaaa
cagctgctggagctgcagcagaagaagatcgagctggagctcgagcagaccaaagctcag
ctggctggagggtttgtgatgccgacgccgactccggtggcgccgagcacaccgcccaag
acgggcagccaaacggcccccgtggtccggccctgggtccccgtgggtcagactcagacg
gacgccaaggtgcccaccagagacccccgactgaaccgcagcgcaccccccgccgcctca
cagcccaaagaacagcctgctgggaagaaagacggcgccgccactcctgagaaatccacc
cggccggagaaggcccggacgcccaagaaggaggcgtctgaggacaaggacaagtccaag
tccaagtctccgtctccacttgccaaaagcgtcccgagtaaaaccaaacagccggaggcc
gagaagtcagcagacagcaccaagaaagaccccaggctgaagaaacgcacgcaggacaag
agcggggacgccaaggatgacgagcagaaggagaaaaagaggtgcaccgagaagaaggag
cgcgagggcgccgcccgggggcccgaccgagggtctgaccgagggtctgaccgggggccc
gaccctcagaggttacacaaggggaagctggtgaacggttcggtgacaaaacacgaccgc
gacgagccggctgacaaacccgagttcaagacgggaggcaacgcccgtacgcacgcacgc
aaacgtacccgctcccgctccaggtcccgctcccccaccgcctccccgaagaggaaggac
agacggtcccccaagagcagagcccgcagcagctccctgtccccgtccccgtcccacaaa
gccagcaaacccaggagggcctgtgccgacgaacccgaccacggcaagccccgagacccc
cgccccgcacccaagaagaaccaatcagagagcaggaggtcaaagaggccggcggaggac
cgccactccgagtctagagagtctcactcgccacggagccacgacgcaggaggcaaggac
gctaaggacgctcctcaccgctggaggagcggctgggaagaaaacaaacatacgaagctg
ccggaggagcctcacctgaagccttcagctcctcagagacacaaacagcacagtggcccg
cctcgtcccaccaccccccgcacgcccaagcaccgcctcagcgtcgacgccaacctgcag
atccccgaagtccttaactccgcctccaagaaggacctgctgaggagggcgagtaagcgt
ctggagagcggcgagatcaccgaggaggacttcctgaacatggcccacaagatcaaacac
ttcttccagtatcaggaggagaagcagcagcgctccgacagctgggacgactccgccgac
ttccccgccaagaaaccgccgctgctgaccacgccggcccccgccgccctgccgcggccc
ctcgaggacatggacccggcggagctgtcatactacgaacacaagtccaagctgaggaag
acgcaggtgacccaccgaaaccacggagaggagtgggaggcggaggagagtccggaggag
ggcgaggattcaggacagggcgagaagacgggtggcggccgcggcgccggacacccgcca
tcacataaatacagccgggtgccacgagacagacaaggtgagcgggggagtaaagagcgc
gaggagccccgggccccgctcggccccatgatgattgaggagtaccaccacggcgccaaa
gagttcccgcccccccttaagtctctgccgggccttcgcttcaggaggagagccgacccc
cgagagtccagtgagcgggagtggacgtctccgctgacggagcgccagcgcgaggagcag
aagagcggctatgacgctccgcggagattcggcccacctgccgactccagactcgccgac
ccgcggaggccggagggggccccccccgccggggccacggtgctcaggaactgtcccagc
ccggcgggtgtggaggcgccgcggttcgagcgtgagcgtctgtcgccgctgcaccagaag
gactcagcagaaatgagcccggtcccccgcttcgagagccccaacagtgaacactctgat
gatgggcccctggaggccccgcctcttccccctcctcccaaatccatcctgaaagtgcca
ggccgctcggggcccctgtcctctgtccgccagcacagtgacntcccaggacacacgcca
cctcacgacggggggcacccgcccgcacgctacgaggggcctggccacatgggcccctcc
agaccgcacgctccagggtggtacgagggcagtggccctgtgcgctacgaggactcatca
cgatttgaggcgccgcaccacgcaggccccagcaggttcgacggggggccgcctcatcac
aacctgccagagcgatttgaggggccccacatgtctctcggtccggtcagaggcggggac
agcatcagccgccttgacgggccccctcaccctcagggcccagggaggtttgatggaccc
atcagtcagcagcccccggttaggtttgagggcccaattcagcgcttcgagggcccgcta
cgctttgacaacaacatggccctgggccctggagctggaccaattggcttccagcagccg
cggcccctgcgcttcgacggccctccaaaccagatgggccccatgaggtttgagaacccc
agtcatatgcgcttcgatgggcccgttcagccggggcccaggtttgacttacccaacgta
gcccaccaaggcgggcccccactgtatgaggggcccctgaggttcccccaacacaacctg
cagccccctatgagacccctggccccacccatctatgacagtcccctgggcccccagcag
aacttcaacatgggcccccagcgcttcccggagcccctgaaccctcagttccagacgggt
ccgatggcgttcccggcggggcccaacctgcagccagggggaagcttcaacatgcagccg
gggccgcccttcagccagccgggcccgnggcccttctacaaccccgcggcccccgccgtc
agcatgccgcagccggtgaacctgttggggaacccgtcgcagccgttcctgcctcagagc
tcggcgccgttcactcagactccgcaggtcgtccccacagagaatcacttcggtcaggtc
gacgttaacgacctgctgaccaaactcatctccaccggcatcatcaaaccctcgcagccc
gacgccgcgccggcccctggctccgagtcggcctcggtggcctcggcggctcctcctgcg
gtcgaggaggaggaagaggaggccgaggaggcggaggaggacgaggacgttgacgtcccg
gacctcaccagcttctccctcgacgacatgaaactgcgttacgagagcgtggtcacgaag
ctgtactcggggaatcagtgctgcctgtgcagcatgaggttcaccgccgctcagaccgac
atgtacgccgaccacctggactggcacttcagacagaaccacgccggcaaggtcgccagc
aagaagatcacacaccgccgctggtactacacactcagggactggatcgagttcgaggag
atcgccgacctggaggagcgagcgaagagtcagttctttgagaaggagaacgaggaggag
gtgcagaagagtcaggcgngcgccaaggagaaggagtttcagagcgtcaaggccaccaag
gaccaagtgggggagtcgtgtgaaatctgtcaggagccgtttgagacgtactgggtggag
gaggaggaggactggttcctgaagaacgccgtcagagtcgacgacaagaacttccacccc
gcctgttttgaggattataaaaacacgtcgtacctcgacgtcacgccgtcgcccaacaag
ctgctcagcgaacacccactgagcgcgtttataaagaccgaggcagaagaagagggctct
tcctgtgctgtcgccgccaccgccgccgcctccgcctccgccgccaccgcctcggtcaaa
caggaagtggagagcgaggcgagcgagctgccagctgtgaaaaaagaggaggaggaggtt
ttaacggacgaagtgcaatgtgccgagagcagacagtga
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