Plectropomus leopardus (leopard coralgrouper): 121962913
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Entry
121962913 CDS
T07454
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121962913 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plep03400
]
121962913 (lig4)
Enzymes [BR:
plep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121962913 (lig4)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121962913 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
121962913
NCBI-ProteinID:
XP_042369170
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All DBs
Position
24:complement(15034259..15040214)
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AA seq
910 aa
AA seq
DB search
MEGTSKSSAAGEPSVAAQVPFLHLCSALEKIQKSKLRPDKSKILGDFIESWRKFHSVLHK
DSPKTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIDVLGLPKNGPEASKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPAVSL
SDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FDYTQQFGGSPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTEVFMQKGSKFDIKKLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRYETLQTVFNPVKGRIHLVSKVDARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGESWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTERPEVYIEPCNSVIIQVRAAEIVGSDMYRTNCTLRFPRIEKIRDDKEWHQCMT
LAELDEFRSKASGKLASRHLHIDGDEPQKKKRKQPAKPKKVIGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTDDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLVSSN
QHDVVWAAWLLECLDQKDVVPWQPRHMIHMSPATREHFAKEYDSYGDSYFVDTDEQQLQE
VFDRIRDADVSAAVDISQVEQRCGWEDLPTSMFRPFEVYMDRYADIGDPKTTIPTSCLDI
RALEFRYHGGTVVQKLKEGVSHVIINEETRLLALRTLRRSFRKKFKIVKDSWVTDSIKEG
YVMNDTDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttctaaaagcagtgctgcaggtgagccctctgttgctgctcaggttcct
ttccttcacctgtgcagtgccttggagaaaatccagaagtcaaaactccgaccagataaa
tccaagatccttggggatttcattgaatcatggaggaagtttcattctgtcctccacaag
gacagccccaaaacaacagactctttctacccagctatgcgcctcattgtccccccattt
gaacgagagcgtatggcatatggcatcaaagagaacatgttagctaaactctacatcgat
gtattaggtctcccaaagaatggcccagaggccagtaaactgttgaactaccgtgcccca
actacatctcaaggagaagctggagactttgctggcatggcgtactttgtgctaaagaaa
cgatgcaccagtcaaggaaacctcagcatcaaagaagtcaacgattttctggactcggtg
gcgatcaacaacgccagcaagcagaaggatcttgtgaaaaagagtctgctgcacctcatc
acccagagctcggctcttgagcaaaagtggctcatcaggatgattcttaaggacatgaaa
ctcggggtcagcaaagaaactgttctgcaggtcttccatccagatgctgcagagctctac
aatgtcaacacggacttaaacaaggtctgccagcagctccacaaccccgccgtgtcttta
agcgacgtctcaattggactcttttctgctttcaagccgatgctggcagctgtggcaaac
atccgtaatgtggagaaacagatgggaaacagccctttttacattcagaccaagctggat
ggagagcgtatacagctgcacaaagacggggacgtgtataagtacttcagcagaaatgct
tttgactacacccaacagtttggaggatccccactggagggctcactgacgccttacatt
cacaatgtttttaaaagccacgttgtaaactgtatcctcgatggtgagatgatggcatac
aacccgaccacagaggtcttcatgcagaaggggagcaaatttgacatcaagaaactcatg
gacgattcagagctgcagacgtgcttttgcgtgtttgacgtgttgttagtcaatgaccag
aagctcggcaaggaaactctgaagaagcgctacgagactcttcagacagttttcaatcca
gtcaaagggaggatacacctggtgtcaaaggtcgatgccagaaccatgcaggaggtggtg
aatgccctcaatgacgctatcgacagcagagaagaggggatcatggtgaaggatccattg
tccatctacaaaccggacaaacgcggggagagttggctgaaaataaagccagaatacgta
gatggcttgatggatgagctggacctgctgattgttggtggctactgggggaaagggaga
cgaggtggtatgatgtcacatttcttatgcgccgttgctgaagctccaaagccaggtgag
aaaccctcagttttccacactctgtgccgcatcggctctggctacaccatgaaggagctg
tatgacctcgggttgaagctcgccaagcactggaaagtctatcggaaaaacgacccaccg
gcatccatcctgtgtggaacggagagaccagaagtttatatcgaaccctgcaactcggtc
atcatccaggtgcgggcggctgaaatagtcggaagcgacatgtacagaaccaactgcacc
ctgcgctttcccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgact
ctggcggagctggatgagttccgcagtaaggcgtctgggaagctcgcctcacggcacctt
cacatcgacggcgatgaaccacaaaagaagaagcgcaagcagccggcaaaacccaagaag
gtgatcgggatcatcgaccactttaagccccaggacctttctggggttaccaaggagacg
gatatgttcgaggatgtggagttctgtatcctgaatggcacagatgatcaccctaaggcg
gagctggagaagggcgtggccagatgtggaggtatcgtggttcaaaacccaggacgggac
acctactgcgtgattgccggcgtggagaacatgcgtgtgaagaacctggtttcatccaac
cagcacgacgtggtgtgggctgcctggctgctggagtgcctggaccagaaagacgtggtc
ccatggcaaccgcgtcacatgatccacatgtcccccgccaccagggagcactttgccaag
gagtacgacagctacggtgacagctactttgtggacacggacgagcagcagctgcaggag
gtgtttgatcggatcagggatgcagacgtgtctgcagcagtggacatcagccaggtggag
cagcggtgcggctgggaggaccttcccacgagcatgttcagacccttcgaggtttacatg
gaccgctacgctgacataggagacccgaaaaccaccataccgacctcctgtttggacatc
agggcgctggagtttcgctaccatggagggacggtggtgcagaagttaaaagaaggagtg
tctcatgttatcatcaacgaggaaacaagactcttggcattaaggactctgaggcgcagc
tttaggaagaagtttaagattgtaaaagactcatgggtgactgactcaatcaaagaaggg
tacgtgatgaatgacactgactacttagtctga
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