Peromyscus leucopus (white-footed mouse): 114682851
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Entry
114682851 CDS
T07241
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03013
Nucleocytoplasmic transport
pleu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114682851 (Upf1)
03015 mRNA surveillance pathway
114682851 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114682851 (Upf1)
Enzymes [BR:
pleu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114682851 (Upf1)
5.6.2.5 RNA 5'-3' helicase
114682851 (Upf1)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114682851 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
114682851 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114682851
NCBI-ProteinID:
XP_028712749
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All DBs
Position
17:54790034..54812641
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNLTQRPDYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacaccgaggaa
gccgagctgctcggagccgacacccagggttccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggcggtcccggaggcgcgggaggcccgggcggagcg
ggcgcaggcggcgcggcgggccagctcgacgcgcaagttggaccagagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagccaactgctggctgagctgaacttt
gaagaagatgaagaagacacatactacaccaaggacctcccagtccacgcctgcagttac
tgtggaatccatgatcctgcctgcgtggtttactgcaataccagcaagaagtggttctgc
aacggccgaggaaatacttctggcagccacattgtgaatcacctggtgagggccaagtgc
aaggaggtgacgctgcacaaggacgggccgctgggcgagacggtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctgggcttcatccccgccaaggccgactcggtggtg
gtgctgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctcggagcaggagcagctgcgggcacggcagatcacggcgcagcagatcaacaagctg
gaggagctgtggaaggaaaacccttcggctaccctggaggacctggagaagccaggtgtg
gatgaggagccacagcacgtgctcctgcggtatgaggatgcttaccagtaccagaacatc
ttcgggcccttggtcaagctagaggctgactacgacaagaagctgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggtgacgagatctgtctgcggtacaaaggggacctagcacccctgtgg
aaggggattggccacgtcatcaaggtccctgataacttaactcagcggccagattacggt
gatgagattgctatcgagctccgcagcagcgtgggcgcacccgtggaggtgacccacaac
ttccaggtggatttcgtgtggaagtcgacctcttttgataggatgcaaagtgcgctgaag
accttcgctgtggacgagacttctgtgtcaggatacatctaccataagctgctgggccac
gaggtggaggatgtggtcatcaagtgccagctgccaaagcgcttcacagctcaggggctc
cccgacctcaaccactctcaggtgtatgctgtgaagaccgtgctgcagagaccactcagc
ctcatccagggccctccaggcacaggcaagacggtgacgtcggccactattgtctaccac
cttgctcggcagggcaacgggcctgtgctggtctgcgccccaagtaacatcgctgtggac
cagctcacagagaagatccaccagacagggctgaaggtcgtccgtctctgtgccaagagc
cgcgaggccattgactccccagtgtccttcctggctctccacaaccagatcaggaacatg
gacagcatgcccgagctgcagaagctgcagcagctaaaggacgagacgggtgagctgtcg
tctgcagatgagaagcggtaccgggcgctcaagcgcacagcggagagagagctgctcatg
aacgcagatgtcatctgctgcacttgtgtgggtgctggtgacccaagactggccaagatg
cagttccgttccatcctcatcgatgagagcacacaggccaccgagcctgagtgcatggtg
cccgtagtcctgggggccaagcagctgatcctcgtgggtgaccactgtcagctgggacca
gtggtgatgtgcaagaaggcagccaaggccggactgtcacagtcgctctttgagcgcctg
gtggtgctgggcatccggcccatccgcctgcaggtgcagtaccgcatgcaccccgccctc
agcgccttcccgtccaacatcttctacgagggctcactgcagaatggcgtcactgcagcg
gatcgtgtcaagaagggctttgacttccagtggccacagcctgacaagcccatgttcttc
tacgtgacacagggccaggaggagattgccagctcgggcacgtcctacctcaacaggacg
gaggcagccaacgtggagaagataactacaaagctgctgaaggcgggcgccaagcctgac
cagattggcatcatcacaccctacgagggccagcgctcttacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaagtggagattgccagtgtggacgcc
ttccagggccgggagaaggacttcattatcctgtcctgtgtgcgtgccaacgagcaccag
ggcatcgggttcctgaatgaccctcggcgtctcaacgtggccctcaccagagcgagatac
ggcgtgatcatcgtgggaaacccgaaggcgctgtcgaagcagccgctctggaaccacctg
ctgagctactacaaggagcagaaggcgctggtggaggggcccctgaacaacctgcgggag
agcctgatgcagttcagcaagccccgcaagctcgtcaacaccgtcaacccgggggcccgc
ttcatgactacggccatgtatgatgcccgtgaggccatcatccctggatctgtctatgac
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcaggtcccagccacgtggccgccatgaacatccccattcccttcaacctggtc
atgcctcccatgccgccacctggctactttggacaggccaacgggccggctgctggccgg
ggcaccccaaaaagcaagactggccgtggaggccgccagaagaaccgcttcgggcttcct
gggcccagccagaccacccttcccaacagccaggccagccaggacgtggcctcacagccc
ttctcgcagggggccctcacgcagggctacgtgtccatgagccagccctcccagatgagc
cagcccggcctctcccagccggaactgtcccaggacagctacctcggtgatgagtttaag
tcacagatcgacgtggccctctcgcaagactccacgtaccagggggagcgggcgtaccag
cacggcggggtcaccgggctgtcccagtactag
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