Peromyscus leucopus (white-footed mouse): 114695113
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Entry
114695113 CDS
T07241
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114695113 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114695113 (Lig4)
Enzymes [BR:
pleu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114695113 (Lig4)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114695113 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
HTH_Tnp_Tc3_2_like
Motif
Other DBs
NCBI-GeneID:
114695113
NCBI-ProteinID:
XP_028728144
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All DBs
Position
16_21:complement(79774182..79781649)
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AA seq
912 aa
AA seq
DB search
MATSQTSQTVAAHVPFADLCSTLERIQKSRDRAEKIRHFKDFLDSWRKFHDALHKNKKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRGGKDALKLLNYRTPTGART
DAGDFAMVAYFVLKPRCLQKGSLTIQQVNELLDLVASNNSGKRKDQVKKSLLQLISQSSA
LEQKWLIRMIIKDLKLGISQQTIFNVFHSDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADVERVEKDMKQQSFYIETKLDGERMQMHKDGEVYQYFSRNGYNYTS
QFGASPQEGSLTPFIHGAFRTDVQKCILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYDILNDTFTPIPGRIEIVQKRQAHTKNEVVDALNE
AIDNREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAETPPPGERPSTFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHRKSPPSSILC
GTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGSTLRFPRIEKIRDDKGWHECMTLGDLE
ELRGKASGKLATKHLHVGDDDEPREKRRKPVSKTKKSIGIIEHLKAPNLSNVSKVSNVFE
DVEFCVMSGLDGHPKSDLENRIAEFGGYIVQNPGPDTYCVIAGCENIRVRNIISSDRHDV
VKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDTDLDQLKEVFLG
IKKPSEQQTLEEMAPVIADLEYRYSWDHSPLSMFRQCTVYLDLYAAINDLSSKIEATRLD
ITALELRFGGAKVVSCLSEGVSHVIIGEDQRRVADFKVFRRTLKKKFKILQERWVTDSVD
KCELQEENQYLL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcacagacttcacagactgttgcagcgcacgtcccctttgcagatttatgt
tccacattggaacgaatacagaaaagtagagaccgtgcagaaaagatcaggcacttcaag
gacttcttagactcttggaggaaatttcatgatgcccttcataagaacaagaaggatgtt
acggactctttttacccagccatgagacttattcttcctcagttagagagagagaggatg
gcttatggaatcaaagaaaccatgctcgccaagctttacatcgaattgctgaatttacca
agaggaggcaaggacgccctgaagctcctgaattaccgaacacctactggcgctcgcacg
gatgccggggactttgccatggttgcgtacttcgtgttgaagccacggtgcttacagaaa
ggaagcttaaccatacagcaggtaaatgaactcttagacttagtggccagcaataattct
ggcaaaaggaaagaccaggtgaaaaagagccttctccagttaataagccaaagttcagca
cttgagcaaaagtggctgattcgcatgattatcaaagacttaaagcttggcatcagtcag
caaactatatttaatgtttttcacagcgatgcagttgagctgcacaatgtcaccacggat
ctggaaaaggtctgtaggcaactccatgacccctctgtggggctcagtgatatctccatc
actctgttttctgcctttaagccaatgctagctgccatagcagatgtggagcgcgtggaa
aaggacatgaagcagcagagcttctacatcgaaaccaagctggatggcgagcgcatgcag
atgcacaaagacggggaggtgtatcagtacttctccagaaatggctacaactataccagt
cagtttggcgcctctccacaggaaggctcactcaccccattcattcatggtgcattcagg
acagacgtgcagaagtgcatcctcgatggcgagatgatggcctacaacccgaccacacag
accttcatgcagaagggcgtcaaatttgatatcaaaaggatggtcgaagattctgacctg
cagacgtgttattgtgtctttgatgtgttgatggttaataataagaagctagggcgtgag
accctcaggaagaggtatgatatcctgaatgatacttttacacccatcccaggccggata
gaaatagtgcagaaaaggcaagctcatacaaagaatgaagtagtggatgcattaaatgag
gccatagataacagagaggagggcatcatgattaaacaccctctgtccatttataagcca
gacaaaagaggcgaaggctggctaaaaattaaaccagagtatgtcaatggattaatggat
gaattagacctcctaattgtggggggctactggggtaaaggctcacggggtggcatgatg
tctcacttcctgtgtgcagtggcagagacgccccctcccggtgagaggccatctaccttc
cacaccctgtgccgcgttgggtcaggatacaccatgaaagaactctatgatcttggcttg
aaactggccaaatactggaaaccctttcacaggaaatctccgccgagtagcattttatgc
gggacagagaagccggaggtgtacatcgagccctgtaactctgtcattgttcagatcaag
gcagcggagattgtccccagtgacatgtacaagaccggctccacgctgcgcttcccacgc
atcgagaagatcagagacgacaaagggtggcatgagtgcatgaccctgggtgacctggaa
gagctgagggggaaggcgtctgggaagcttgccaccaaacaccttcacgtcggtgatgat
gacgaacctagagaaaagaggcggaaacccgtctccaaaacgaagaaaagcattggaatt
attgaacacttgaaagcacctaacctttctaacgtaagcaaggtttctaacgtttttgaa
gatgttgagttttgtgtgatgagtgggttagatggtcatccgaagtctgacctagagaac
agaattgcagaatttggtggttatatagtgcagaatccaggcccagatacgtactgtgtg
atcgcagggtgcgagaacatcagagtgagaaacattatctcttcagatcgacatgatgtt
gtcaagcccgagtggcttttagagtgttttaaaacaaaaacgtgtgtgccatggcaaccg
cgctttatgattcacatgtgcccatcaacaaagcagcattttgcccgtgaatatgattgc
tatggtgatagctattttgttgatactgatttggatcagctgaaagaagtgtttttagga
attaagaaacccagtgagcagcagactctggaagaaatggcgcctgtgattgctgactta
gaataccgttattcctgggaccactctcctctcagcatgtttcgacaatgcactgtttat
ctcgacttgtacgctgctattaatgacttgagttccaaaattgaagcaacgagattagac
atcacagcacttgagctgcgctttggtggagcaaaggtagtttcctgcttatctgagggg
gtgtctcatgtaatcatcggggaagaccagagacgagttgcagacttcaaagtcttcaga
agaactcttaagaaaaagtttaaaatcctgcaggaacgttgggtgactgattcagtagac
aagtgtgaattgcaggaggaaaatcagtatttgctttag
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