Peromyscus leucopus (white-footed mouse): 114698332
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Entry
114698332 CDS
T07241
Symbol
Col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04151
PI3K-Akt signaling pathway
pleu04510
Focal adhesion
pleu04512
ECM-receptor interaction
pleu04820
Cytoskeleton in muscle cells
pleu04926
Relaxin signaling pathway
pleu04933
AGE-RAGE signaling pathway in diabetic complications
pleu04974
Protein digestion and absorption
pleu05146
Amoebiasis
pleu05165
Human papillomavirus infection
pleu05200
Pathways in cancer
pleu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
114698332 (Col4a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114698332 (Col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114698332 (Col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114698332 (Col4a5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
114698332 (Col4a5)
09154 Digestive system
04974 Protein digestion and absorption
114698332 (Col4a5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
114698332 (Col4a5)
09162 Cancer: specific types
05222 Small cell lung cancer
114698332 (Col4a5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
114698332 (Col4a5)
09174 Infectious disease: parasitic
05146 Amoebiasis
114698332 (Col4a5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
114698332 (Col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pleu04147
]
114698332 (Col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114698332 (Col4a5)
Exosome [BR:
pleu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114698332 (Col4a5)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114698332 (Col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114698332
NCBI-ProteinID:
XP_028732806
LinkDB
All DBs
Position
X:94723621..94925266
Genome browser
AA seq
1692 aa
AA seq
DB search
MNSSTQASFSFFIATRILASGIMLLTFRACHGCSLGSKCDCSGIKGEKGERGFPGLEGHP
GLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGQDGAPGPQ
GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNQGYPGPP
GIQGPPGPKGISGPSGPAGPPGLMGPPGPPGPPGPKGNMGLNFQGPKGEKGEQGLQGPPG
PPGQISEQKRPIDLEFQKGDQGVPGDRGPPGPPGIPGPPGPPGGVKGEKGEPGEPGKRGK
PGKDGESGQPGTPGLPGDPGYPGEPGRHGEKGQKGDIGPPGPPGLVIPTHGTGVTVGEKG
NVGLPGLPGEKGERGFPGIQGPPGFPGPPGTAVMGPTGPPGYPGERGQKGDEGPPGICIP
GSPGLDGQPGAPGLPGPPGPPGPHLPPSEEICKAGPPGPPGSPGDKGLPGEQGVKGDKGD
TCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGEKGEKGHAGATGPKGLPGIPGPPGAPG
FPGSKGDPGDVFTLPGMKGDKGELGSPGAPGLPGLPGTPGKDGLPGLPGPKGEPGGIAFK
GERGPPGNPGLPGLPGNMGPMGPVGFGPPGPIGEKGIQGVAGNPGQPGLPGPKGDPGQTI
TQPGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLLGPPGPKGFPG
IPGPPGAPGTPGRMGPDGPPGSPGFPGPKGEPGFGLPGPPGPPGFPGFKGTPGPKGDRGF
PGPPGPPGRTGLDGLPGPKGDTGSNGQPGPVGPPGLPGIGIQGPPGPPGTPGPIGQPGLH
GIPGEKGDPGPPGFDVPGPPGERGSPGLPGVPGLIGPPGSPGLPGKAGVPGFPGAKGEIG
MMGPPGPPGPLGIPGRSGAPGLKGDDGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDF
LGSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGEPGSPGLPGPKGDPGLPGPPGL
TGPPGLKGNIGDMGFPGPQGVDGPPGPPGVPGQPGSPGLPGQKGSKGEPGVSGIGLPGHP
GPKGEPGLPGYPGNPGIKGSVGETGLPGLPGSPGAKGQPGLPGFPGTPGLPGPKGMNGLP
GNPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGTPGPPGLPG
LSGQKGDGGSPGIPGNPGLPGSKGEPGFQGFPGMPGPPGPPGSPGPALEGPKGNPGPQGP
PGRPGPPGFQGLPGSEGPRGPPGNGGIKGERGNPGPPGQPGLPGLKGDQGPPGLPGNPGR
PGLNGMKGDPGLPGVPGFPGMKGPIGVPGSTGPDGEPGLTGPPGPPGLPGPSGQSIIIKG
DAGPPGVPGQPGLKGPPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPG
TRGLDGPPGPDGLQGPPGPPGTISVAHGFLITRHSQTTDAPQCPQGTVHIYEGFSLLYVQ
GNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLK
GQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQA
LASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDMSDMFSKPQSETLKAGDLRT
RISRCQVCMKRT
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgaattctagtacacaggcttctttctccttttttattgcaaccaggatcttagccagt
ggaatcatgctcctgacatttagggcctgccatgggtgttctcttggatcaaaatgtgac
tgcagtggtataaaaggggaaaagggagaacgaggatttccaggtttggaaggccatcca
ggtttgccaggatttccaggtccagaagggcctccaggacctcggggacaaaagggtgat
gatggaattccagggccaccaggaccaaaaggaatcagaggtcctcctggacttcctggt
ttcccagggacaccaggtcttcctggaatgccaggccaggatggagctccaggacctcaa
ggtatccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggtttt
cctggtttacaaggtcctcctggacctcctgggatcccaggtatgaagggggaaccaggt
agtataatcatgtcatcactgccaggaccaaagggtaatcaaggctacccaggtcctcct
ggaatacaaggtccacctggtcccaagggcatatcagggccaagtggtcctgctggacca
ccaggtttaatgggccctcctggaccaccaggaccaccaggaccaaagggaaacatgggc
ttgaatttccagggacccaaaggtgaaaaaggtgagcaaggtcttcagggcccacctggt
ccacctggacagatcagtgaacagaaaagaccaattgatctagaatttcagaaaggagat
cagggagttcctggtgatagaggccctccaggacctccaggaatacctggtcctccaggt
cctcctggtggtgtgaaaggtgaaaaaggtgagccgggagagccaggcaaaagaggtaaa
ccaggcaaagacggagagagtggccaacccggaaccccaggtttgcctggtgatcctggt
taccctggtgaaccaggaagacatggtgaaaagggccaaaagggtgatattggcccacct
ggacctcctggactcgtaattcctacacatgggactggtgtgactgtgggagaaaaagga
aatgttgggctacctggtttgcctggagaaaaaggagagcgaggatttcctggaatacaa
ggtccacctggctttcctggacctccagggacagcagtcatgggtcctactggtccccct
ggatatcctggagaaaggggccagaaaggtgatgaaggtcctcctggaatttgtatccct
ggatctcctggacttgatggacagcctggggctcctggtcttcctgggcctcctggtcct
cctggccctcatttgccacccagtgaagagatatgtaaagcaggccctccaggtccccca
ggatctccaggtgataaaggactcccaggagagcaaggagtgaaaggtgacaaaggtgac
acctgcttcaactgtatcggaactggcatttcagggcctccaggtcaacctggtctgcca
ggtctcccaggtcctccaggatctcttggattccctggagagaagggtgaaaaaggacat
gctggagcgactggtccaaaaggattaccaggcatacctggacctcccggtgctccaggc
tttccaggatctaaaggggaccctggtgatgtcttcactcttccaggaatgaaaggtgac
aaaggagagttgggttcccctggagctccagggcttcctggtctacctggtactcctgga
aaggatggactgccaggactccctggccccaaaggagagcctggtggaattgcttttaag
ggtgaaagaggtcctcctgggaacccaggtttgccaggtctcccaggaaatatgggccct
atgggccctgttggttttgggcccccaggccctataggtgaaaaaggcatacaaggtgtt
gcaggaaatccaggccagccaggattaccaggtcctaaaggtgatccaggccagaccata
acccagccagggaagcctggcctgccaggtaatccaggcagagatggtgaagtgggcctc
ccaggtgatcccggacttcccggccaaccaggcctaccagggatacctggtagcaaagga
gaaccaggtatcccggggattggacttcttggaccaccaggtcccaaaggtttcccagga
attccgggacctccaggagcacctggaacacctggaagaatgggtccagatggacctcct
gggtcaccaggctttccaggaccaaagggagagccaggatttgggttacctgggccacct
gggccaccaggattcccaggtttcaaaggaacacctggtccaaaaggtgatcgtggcttc
ccaggacctccaggtcctccaggacgcactggcttggatgggctacctggaccaaaaggc
gatactggatcaaatggacaacctggcccagtagggcctcctgggcttccaggaattggt
attcagggaccaccaggaccaccaggaactccagggccaataggccagcctgggttacat
ggaataccaggagagaagggagatccaggacctcctgggtttgatgttccaggaccccca
ggagagagaggtagtccagggcttcctggagtccctggtcttataggacctccaggatca
cctggtcttccaggaaaagcaggtgtccctggattcccaggtgccaaaggagaaataggt
atgatgggccctccaggcccacctggacccttgggaatccctggcagaagtggtgctcct
ggtcttaaaggtgatgatggcatgcaaggtcagccagggcttcctggccctgcaggagaa
aaaggtggtaaaggagaacctggccttccaggtccccctggaccaatgcatccagatttc
ctgggatcaaaaggagagaagggtgagcctggcttaccaggtattcctggactttcagga
ccaaaaggctaccagggtttgcctggagacccagggcaacctggactgagtggagaacct
ggatcaccaggactaccaggtcccaagggtgaccctggtctccctggtccaccaggactt
acagggcctcctgggcttaaaggaaacattggtgacatgggttttcctggccctcaaggt
gttgatgggccccctgggcctcctggagttcctggacaacctggctctccagggttacct
ggccagaaaggaagtaaaggagagcctggcgtttcaggcattggtcttccgggtcatcct
ggtccaaagggtgaacctggtctacctggatatccaggaaacccaggtatcaaaggttcc
gtgggagagactggtctgcctggattaccaggaagccctggagcaaaagggcagccaggc
ctgcctggattcccaggaaccccagggcttcctggaccaaaaggtatgaatggtcttcct
ggtaaccctggccttccaggagaacctggtcctgtaggtggtggagggcgtcctgggcca
ccaggacctcctggcgaaaaaggcaagccaggtcaagatggcattcctggaccagcaggg
cagaagggagaaccaggtcaaccaggctttggaaccccaggacctcctggactcccagga
ctttctggtcaaaagggtgatggaggatcacctggcattccaggaaatcctggtcttcca
ggttcaaagggtgaaccaggctttcagggattccctggtatgccaggtcccccaggtcct
cctggttctcctggtccagctttggaaggccctaaaggaaaccctgggcctcaaggccct
cctgggagaccaggtcctccaggtttccaaggtctaccaggttctgaaggtccccgtggt
ccccctggaaatggaggcattaaaggagagaggggaaacccaggcccacctgggcaacct
ggcttacctggtttgaaaggagatcaaggaccaccaggactcccgggtaatcctggccgg
ccaggtctcaatggaatgaaaggagatcctggtctccctggtgttccaggattcccagga
atgaaaggacccattggagtaccaggctcaacaggccccgatggggaaccaggccttaca
gggcccccaggtcctcccgggttacctggtccttcaggacagagcattataatcaaagga
gatgctggtcctccaggggttcctggccaacctggattgaaaggtccaccaggacttcca
ggccctcaaggcttaccaggtccaattggccctccaggagatccagggcgcaatggactc
ccaggctttgacggtgcaggcgggcgcaaaggagacccaggtctgccaggacagccaggt
acccgtggattggatggtcccccaggacccgatggattgcaaggacctccaggtccccct
ggaaccatctcagttgcccatggattcctcatcacacgccacagccaaacaacagatgca
ccacaatgcccacagggaacagtccatatctatgaaggcttttctctcttatatgtacaa
ggaaataaaagagcccatggtcaagacttgggaaccgccggcagctgccttcgtcgattc
agtaccatgcctttcatgttctgcaacattaacaatgtttgtaactttgcttcaagaaat
gactattcttactggctttccaccccagagcccatgccaatgagtatggaacccctaaag
ggccaaagcatccagccattcattagtcgatgtgcagtatgtgaggcaccagctgtggta
attgcagttcacagccagactattcaaattccacattgtcctcaggggtgggactctctg
tggattggttattccttcatgatgcatacaagtgcaggagcagaaggctcgggccaagcc
ttagcctctcctggttcctgtttggaagaatttcgttcagctcccttcatcgagtgtcat
gggcgggggacgtgcaactattatgccaattcatatagcttttggctggccacagttgat
atgtcagacatgttcagtaaacctcagtcagagacactgaaagcaggagacttaaggaca
cgtattagccgatgtcaagtatgcatgaagaggacataa
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