Paucimonas lemoignei: NCTC10937_01957
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Entry
NCTC10937_01957 CDS
T05492
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10937_01957 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_01957 (mfd)
Enzymes [BR:
plg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10937_01957 (mfd)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10937_01957 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SQF97837
LinkDB
All DBs
Position
1:complement(2182811..2186263)
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AA seq
1150 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELVHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDIEAMRTRLEASGYRYVDTVYEHGEFTVRGNLLDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPERPLLPPAELFLPVEDCFARLKSWPRVVASQQDVDAGVGRERFPAQLLPEL
AIEAKANQPLAALSKFIEEFDGRILFTAESAGRREVLLELLERLKLRPKTVDSWNDFVVG
KDRLSITIAPLDDGLLLDQPAIALIAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTAIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVSVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRSQITPDAEKRLDAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEDSLKDLQVEMIDRFGLLPEPTKHLVRITLLKLQAEQLGIKK
VDAGPQGGRIEFAADTPVDPLTLIKLIQGQPNRYKFEGATLFKFMVPMERPEERFNTIEA
LFERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttcttcctgctgctgcaggcaaacaacactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgcaagcgccgccaagcgcttt
accctgcttttgacggccgacagccagagtgccgagcgtctggagcaagagctgaagttc
ttcgcccccgatttgccggtgttgcacttcccggactgggagacgctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcggatcgcgagcctttatcgcctgccggag
ctggtgcatggcgttctggtagtgcccatcaccacagccctacatcgtctggcaccgacc
aaattcctgctgggcagcagcctggtgctggacatcggtcagaagctcgacatcgaagcg
atgcgcacccgccttgaagccagcggctatcgctacgtggacacggtgtatgagcacggc
gagttcaccgtgcgcggcaacctgctcgacctcttcccgatgggcagcaaactgccgtac
cgcattgacctgttcgatgacgaaatcgaaaccctgcgcaccttcgacccggagacccag
cgttccatcgataaggtcgagtcagtacgcctgctgccagcccgggaattcccgctgcaa
aaggaagaagtcacccgcttcaaggcccgttttcgcgaacgcttcgatgttgatttccgc
cgcagtccgattttccaggacctgagcagcggcatcacgccggccggtatcgagtactac
ctgccgctgtttttcgaagagacttcgacgctgttcgattatctgccgcaggacacgcaa
gtgttttccctgccgggcattgagcaggctgcggaaaatttctggaacgatgtacgcaat
cgctatgaagagcgacgggttgatccggagcgtcctttattacccccggccgaactgttc
ctgcctgtggaagattgcttcgcgcgccttaaaagctggccccgcgtggtcgccagccag
caggacgtcgacgcaggcgtcggtcgcgaacgtttcccggcgcagctgctgccggaactg
gccattgaagccaaagccaatcagccattggcagcgctgtcgaaattcattgaggaattc
gacggccgcatcctgttcaccgccgaatcggcggggcgcagggaagtactgctggagctg
ctcgaacgtctgaagctgcggccgaaaaccgtcgacagctggaatgatttcgtcgtcggc
aaggatcgactgtcgatcaccatcgcgccgctggacgacggcttgctgctggatcagcca
gccattgccctgatcgcggaaagcccgttgtttggccagcgcgtcatgcagcgtcggcgc
cgtgaaaaacgcaccgacggcggcaataacgacgcagtgatcaaaaacctaaccgagctg
cgcgaaggcgcgccggtggtgcatatcgatcatggtgtgggccgttatctgggcctggcg
acgctagaggtggaaaaccaggtcgctgaattcctgatgctggcgtatgccgaggacgcc
aagctgtatgtcccggttgccaacctgcatctgatcgcccgttataccggcagcgacgac
gccttggcaccgttgcatcgcctgggctctgaaacctggcagaaagccaagcgcaaggcc
gccgagcaagtgcgggatgtggccgccgagctgctggatatctacgcccgccgcgcggcc
cgcgaaggctatgcgtttgccgacccgaaagccgactacgcgacgttcagcgcaggcttt
ccgttcgaagaaacaccggatcaacagaccgccatcgatgccgtgcgggccgacatgctc
gcgcccaaacccatggaccggctggtctgcggcgacgtgggtttcggcaagaccgaagtg
gcgatgcgcgccgcattcattgcggtgcatggcggccgtcaggtcgcgatcctggtgccg
accaccctgctcgcccaacaacattacaacagcttccgcgaccgcttcgccgactggccg
gtgagcgtggaggtaatgagccgcttcaagtccaccaaggaagtcaacgcggcggtggct
gatctggccgagggcaagatcgatatcgtgattggcacccacaagctgttgcaggacgac
gtcaagatcaaaaacctcgggctggtgatcatcgacgaagaacaccgtttcggggttcgt
cagaaagaacagctcaaggcactgcgcagcgaagtcgacatcctgaccctgaccgccacg
ccaatcccgcgcacgctgaacatggccgtgtccggcatgcgtgacctgtcgatcatcgcc
actccaccggctcgacgcctgtcggtgcgcacctttgtcatggagcagaacaagcccacg
gtcaaagaggcgctgctgcgtgagctactgcgcggcggtcaggtttactacctgcacaac
gatgtgaaaaccatcgagaagtgcgcagccgatctggccgaactggtgcccgaagcgcgt
attggcattggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttc
taccacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccgagcgccaacaccatcattatcgagcgcgccgacaagttcggcctggcgcagctgcac
cagttacgcggccgggttggtcgtagtcaccaccaggcttatgcctacctgttgaccccg
ccacgcagccagatcacccctgatgccgaaaagcgtctggacgccatcgccaatacccag
gacctgggcgcaggcttcgtgctggccaccaacgaccttgaaatccgcggcgcaggcgaa
ctgctgggcgacggccagagcgggcagattcaggcagtgggctttaccctgtacatggaa
atgctcgaacgtgcggtcaagtccatccgtaaaggtgagcagccgaatctggatcaaccc
ttgggcggcggccctgaaatcaacctgcgcgtgccggcgttgattcccgaggcgtatctg
ccggatgtgcatacgcgcctgatcctgtacaagcgcatcgctaatgccgccgacgaagac
agcctcaaagacctgcaagtggagatgatcgaccgcttcggattgctgccggagcccacc
aagcatctggtgcgtatcacgctgctcaaattgcaggccgagcagctgggcatcaagaag
gtcgatgccgggccacaaggtggccgaatcgaattcgccgccgatactccggtagatccg
ctgacgctgatcaagctgattcagggccagcccaaccgttacaaattcgaaggcgccacg
ctgttcaaattcatggtgccgatggaacgtccggaagagcgtttcaacaccattgaagcg
ctgttcgagcgcctgaccccgaaaactgcttga
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