Planctomyces sp. SH-PL62: VT85_02045
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Entry
VT85_02045 CDS
T04401
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plh
Planctomyces sp. SH-PL62
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VT85_02045 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_02045 (ykoU)
Enzymes [BR:
plh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VT85_02045 (ykoU)
DNA repair and recombination proteins [BR:
plh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VT85_02045 (ykoU)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMV36195
UniProt:
A0A142YAI4
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Position
complement(536597..538051)
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AA seq
484 aa
AA seq
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MPLEEYNARRDFTRTREPAGTRGEEHRRPIFVVQEHHASVHHFDFRLEADGVLKSWSVPK
GPSLDPSAKRLAVQVEDHPLSYATFEGTIPKGQYGGGTVAIWDQGTYESLMEDQPEPKSV
SEAIEDGRLEFVMHGERLRGKFNLVRMKWGERKPQWLLMKSNDEFAERGTEPESGPRPKR
KSKPKRAESARPEPSTEAPEAVNLTHPGRIVYPDAGLTKKDVFAYYQKVAGRLLPFLKDR
PITLERLPDGLAGSAHFWQKNTPASYPGWIPRVELQTERGKPVRYALVNDEPTLLYLVNQ
GTLTFHVWASRVGDLDRPDFVLFDLDPGEASFADVVSVARAVKGELDELGVESFVKTSGK
TGLHVLTPWTRKTDFDEARAWALELAEKVAGGMPERATVEIRKAKRGGRVYIDVLQNARG
HHAVPPYVLRATPGATISTPLDWKEVASKLDPAAFTAKKVLARLRKVDPFAGLVESFGEQ
AAER
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgccgctggaagaatacaacgccaggcgagacttcaccaggacccgagagccggccggg
acaaggggcgaggagcaccggcggccgatcttcgtcgtccaggagcaccacgcctcggtc
caccacttcgacttccgcctggaggccgacggcgtgctgaagagctggtcggtgcccaag
gggccgtcgctcgacccctcggcgaagcggctggccgtccaggtggaggatcaccccctc
agctacgccacgttcgaggggacgattcccaagggacagtacggcggcggcacggtcgcc
atctgggaccagggcacctatgagagcctgatggaagaccagcccgagccgaagtccgtc
tccgaagcgatcgaggacggccggctcgagttcgtcatgcacggcgaacggctcaggggg
aaattcaacctggtccgcatgaaatggggcgaacgcaagccccaatggctgctgatgaag
tcgaacgacgagttcgccgagcgggggaccgaacccgagtccgggccgcgaccgaaacgg
aagtcgaagccgaagcgggccgagtccgcccggcccgagccgtcgaccgaagcgccggag
gcggtcaatctgacgcaccccggccggatcgtctatcccgacgccgggctcacgaagaag
gacgtcttcgcttactatcagaaggtcgcggggcgcctcctgccgtttttgaaggaccgg
cccatcaccctcgaacggctgccggacggcctcgccggatccgcccatttctggcagaag
aacacgcccgcttcctaccccggctggattccgcgcgtcgagctccagactgagcgcggc
aagccggtccgctacgcgctggtcaacgacgagccgacgctcctctatctcgtgaaccag
gggacgctgaccttccacgtctgggcctcgcgcgtcggcgacctcgaccggccggacttc
gtgctcttcgatctcgatccgggcgaggcttctttcgccgacgtcgtctcggtggccagg
gcggtcaagggggagctggacgaactgggcgtcgagtcgttcgtgaagacctcgggcaag
accggtctccacgtcctgaccccctggacccgcaagacggacttcgacgaggcgagggcc
tgggcgctcgagctggccgagaaggtggccggcgggatgcccgagcgggcgaccgtcgag
atccgcaaggcgaagcgcgggggacgggtctacatcgacgtcctgcagaacgcgcgaggc
catcacgccgtccccccctacgtcctgcgggcgacgccgggcgcgacgatctccacgccg
ctcgactggaaggaggtcgcgagcaagctcgacccggccgcgttcacggcgaagaaggtc
ctcgccaggctgcgcaaggtcgaccccttcgcggggctcgtcgagagcttcggcgagcag
gcggcggagcgttga
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