KEGG   Paracoccus liaowanqingii: E4191_20915
Entry
E4191_20915       CDS       T07041                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
plia  Paracoccus liaowanqingii
Pathway
plia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:plia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E4191_20915 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plia03400]
    E4191_20915 (ligD)
Enzymes [BR:plia01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E4191_20915 (ligD)
DNA repair and recombination proteins [BR:plia03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E4191_20915 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QDA36546
UniProt: A0A4Y5SUU8
LinkDB
Position
unnamed4:complement(254449..257076)
AA seq 875 aa
MSGLGPYLDKRDFGATPEPSDDGTPSRLGLRYSMQNHDATRLHWDLRLEWGGVLLSWAVT
RGPSLDPGDKRLAVRTEDHPLSYLTFEGLIPKGHYGAGTVMLWDLGWWQPLEPAARGLSK
GHLKFRLHGQRMTGDWNLIRMKGRKASDAKRENWLLVKIDDEAAHQRDPVAHHRTSVASG
RTFAAIRAGKPAALPAHPGALPGHQPVQLATLTDDLADAGAHWHELKLDGYRAQVALGQG
GPRILTRGGHDWTDRFADLLPALRDLPCKAALLDGEIVAGGGLQGFGTLQDAIKAGGPFR
YVAFDLLHLDGRDLTALPLSKRRKALEKLLRPLPPMGAVTLSPIIHGQADEAFAMICGVG
GEGVIAKRVDAPYRGGRSRDWLKIKCRRRGEFLIVGWQASDRRGRPFASLAVADRQGDAL
AYLGKVGTGFDAEAMADLARRMAPLVRKAAPVEVPRREAAGVTWIAPELRIEVDYAETTA
QGRLRHAVFLGLRADPPSEPCPPVQAQKDRPITAGIAISSANRVIFDKPRLTKAGLADYY
AAAAPLMLPELADRPLSLLRLPEGMAGERFFQKHPGKGFPDALRIQQIADSAGETSPHAY
ATDAAGIVGAVQMGTVEFHIWGARRDRLDRPDRLVFDLDPDEGLGFAATRRAALDLRDRL
EALGLASWAMLSGGKGIHIVVPLRRHAGWDTVRLFSRGVALLAAQSEPKRFTAEMSKARR
KGRIFIDWLRNERGATAIAPFSVRARPGAPVACPVSWDELARIRKASAFSTEAALDRGWA
DTAPPDPQGLTARVIEALEDALTRGAEAIRPAFRTCHGKGTPRHHPSPGRVVSSGPWTCR
PSQPATLVRTKMSRRLRWLAAECIRGGICGCPRAG
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgtcgggccttggcccctatctggacaagcgcgacttcggcgccacgcccgagccgtcc
gacgatggcacgccctcgcgccttgggctgcgctattccatgcagaaccacgacgccacg
cggctgcactgggatctgcggctggaatggggcggcgtgctgctgtcctgggcggtgacg
cgggggccgtcgctggaccccggcgacaagcggctggcggtgcggaccgaggatcatccc
ctgtcctacctgaccttcgaggggctgatccccaagggccattacggcgcgggcaccgtc
atgctgtgggatctgggctggtggcagcccttggagcccgccgcgcggggcctgtccaag
gggcacctgaagttccgcctgcacggccagaggatgaccggcgactggaacctgatccgc
atgaaggggcgcaaggcgtcggacgccaagcgcgagaactggctgctggtcaagatcgac
gacgaggccgcgcatcagcgcgaccccgtggcgcaccacaggaccagcgtggcctcgggg
cggaccttcgcggcgatccgggccggcaagcccgccgccctgcccgcgcatccgggcgcc
ctgcccggccaccagccggtccagctggccacgctgaccgacgacctggccgacgccggt
gcccattggcacgagctgaagctggacggctatcgcgcgcaggtggccctgggccagggc
gggccgcgcatcctcacgcgcgggggccatgactggaccgaccgcttcgccgacctgctg
cccgccctgcgcgatctgccctgcaaggccgcccttctggacggagagatcgtcgcgggc
ggcggcctgcagggcttcggcaccctgcaggatgcgatcaaggcgggcgggccgttccgc
tatgtcgccttcgacctgttgcatctggacgggcgcgacctgaccgccctgcccctctcc
aagcggcgcaaggcgctggaaaagctgctgcgccccctgccgccgatgggcgcggtgacc
ctgtcgccgatcatccacggccaagccgacgaggccttcgcgatgatctgcggcgtgggc
ggcgagggggtgatcgccaagcgcgtggatgccccctatcgcggcgggcgcagccgcgac
tggctcaagatcaagtgccgccggcggggcgagttcctgatcgtcggctggcaggccagc
gaccgccgggggcggcccttcgcctcgctggccgtggcggaccggcagggggacgcgctg
gcctatctgggcaaggtcggcaccggcttcgatgccgaggcgatggccgatctggcccgc
cgcatggcgccgctggtgcgcaaggccgcccccgtggaggtcccgcgccgcgaggcggcg
ggcgtgacctggatcgcgcccgagctgcgcatcgaggtcgattatgccgagacgaccgcc
caaggccgcctgcgccatgccgtcttcctgggcctgcgcgccgacccgccgtccgagccc
tgccccccggtgcaggcccaaaaggaccgccccatcaccgccgggatcgcgatcagcagc
gccaaccgggtgatcttcgacaagccccgcctgaccaaggccgggctggccgactactac
gccgccgcggcccccctgatgctgcccgaactggccgaccgccccctgtccctgctgcgc
ctgcccgagggcatggcgggcgagcggttcttccagaagcaccccggcaagggctttccc
gatgcgctgaggatccagcagatcgcggacagcgcgggcgagaccagcccccatgcctat
gccactgatgcggcggggatcgtcggcgcggtgcagatgggcacggtcgagttccacatc
tggggcgcgcggcgcgaccggctggaccggcccgaccgcctggtcttcgacctggacccc
gacgaggggctgggcttcgccgccacccgccgcgccgcgctggacctgcgcgacaggctg
gaggctctgggtctggcgtcatgggcgatgctgtcgggcggcaagggcatccacatcgtc
gtgccgctgcgccgccatgccgggtgggacaccgtgcggctgttcagccggggcgtcgcc
ctgctggcggcgcagtccgaacccaagcgcttcaccgccgagatgtccaaggcccgccgc
aagggccgcatcttcatcgactggctgcgcaacgaacgcggcgccaccgccatcgccccc
ttctcggtccgcgcccgccccggcgccccggtcgcctgcccggtcagctgggacgagctg
gcgcggatccgcaaggcctcggccttctcgaccgaggccgcgctggaccggggttgggcc
gacaccgccccgcccgacccgcaggggctgacggcgcgcgtgatagaggcgctggaggat
gcgctgacgcggggggctgaggcgatccggcccgcctttcggacgtgccatggaaaggga
acgccccggcatcacccttcgcccggcagggtggtgtcgtcggggccttggacctgccgc
ccgtcgcagcctgccaccttggtgcgcacgaagatgtcacgacgcctgcggtggcttgca
gcagaatgcatcagaggcggaatctgcggttgccctcgtgccggataa

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