Candidatus Planktophila limnetica: PHILAsVB114_00975
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Entry
PHILAsVB114_00975 CDS
T05067
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHILAsVB114_00975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_00975
Enzymes [BR:
plim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PHILAsVB114_00975
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PHILAsVB114_00975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASY27261
UniProt:
A0A249LDS2
LinkDB
All DBs
Position
181332..184781
Genome browser
AA seq
1149 aa
AA seq
DB search
MKLIRDVLAADAHICDALESKKRIIAPTSLHPFLASIRAAERPLLIVTSSSRSSEDLVND
LRELHDEVFEFPAWETLPHERLSPRSDTVAQRIATLIKLKENKAHNPIVVTPVRGLIHRI
INSLAQTPVRQLAVGMQCDLKDLINHLGELAYQRTDLVERRGEFAVRGGIVDVFLPLANQ
PVRIDFFGDEIEDISFFDVAGQRTTGVATDSIKILPCRELLLTPAVQAKARALINDFPQA
SEILEKLSEGIASEGMESFIPLLVDSTESILDRMPSNTEIIFIDEERIRSRAADLLATNE
EFYLASWLNAASGGVTPLHSGDGTYMQWDELNAEIDKNGLQQRSFNVFGSDLDKESVFIE
AQAIDPLRGNTERLVDEFRSAADAGQTLIFAAHGHGMHERYSNLFRSAEISVRVVTSTIA
YGFSVPSTRILFISERDLSGSKGAINNTEKLPSKRKTAIDPLELKAGDFVVHEQHGIGRY
IELVSRSVAGVTREYLVLEYASAKRGQPGDRIFVPTDSLEQVSKYVGGETPTVHRIGSGE
WQKAKGRARKAVRQIAGELIRLYAARTSSPGFAFSPDTPWQRELEDSFAYIETPDQLSTI
NEVKADMERPYPMDRIVCGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHTKTF
IERYSGFPIKVAGLSRFNTAKESKEILAGMEAGALDVVVGTHRILSNDVRFKDLGLVVVD
EEQRFGVEQKESLKKLRTTVDVLAMSATPIPRTLEMAVTGIREMSTITTPPEERHPILTY
VGARDDAQITAAIHRELLRDGQIFYIHNRVESIDQAAQKLQTLVPEARIRIAHGQMSEGA
LEDVILAFWNRDFDVLVCTTIVESGLDIANANTLIVERADLFGLSQLHQLRGRVGRGRER
AYAYFLFPPDQPLSELAHDRLKTIAANTELGAGMRVALKDLEIRGAGNLLGGEQSGHIAD
VGFDLYMRMVGEAVHEYKSGIIETSEPNHECKVELPINAHLDAAYVTGERLRLDLYRRLA
DVRNREDVDAIEEELMDRFGALPQEAQTLLGVAALRAFAKSISLREVVAQGKFVRLSPIS
LPESKQITLARLYPGSLYKSASSTVLVALPKSSAWNPSESTAPIVDTSLLAWVTQVVTEL
APTSKGSSS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttatccgcgatgttcttgcagcagatgcgcatatctgcgatgcacttgaatcc
aaaaaacgcatcattgcgccgacttcattgcacccatttcttgcatcaattcgagcagcc
gagcgaccacttttaattgtcacaagctccagcagatcaagtgaagatttagtaaatgat
ctcagagaattacatgatgaagtatttgaatttcctgcctgggaaactttgccacacgag
cgtttaagccctcgcagtgacactgttgcacaacgcatcgcaaccttaattaaactcaag
gaaaacaaagcccacaatccgattgtcgttactccagtgcgcggacttattcatcgaata
atcaattctctagcccaaacaccagtgcgccaattagcagtgggcatgcaatgcgatctc
aaagatctgattaatcatttaggagaactggcataccaacgcactgatttggtcgaacgt
cgtggagaatttgcggtccgcggtggcatcgttgatgtgttccttccattagcaaatcaa
cccgttcgtattgatttctttggtgatgaaatagaagacattagtttcttcgatgttgca
ggacaacgcacaactggtgttgctactgacagtataaaaatattgccatgtcgcgagttg
ctactcactcctgcagtgcaagccaaggcacgagccttgatcaacgattttccacaggca
tctgaaatattggaaaagttatcagagggcattgcatcagaaggaatggagtcattcatt
ccgctcttggttgattcaactgaaagtattttagatcgcatgccatcgaataccgaaata
atttttatagatgaagaaagaattagatctagagccgcagatcttctagctacgaatgaa
gagttttatttggcttcatggcttaacgctgcaagcggtggtgtgacaccactacacagt
ggcgatggcacatatatgcagtgggatgagttgaacgcagaaatagataaaaacggattg
caacaacgaagttttaacgttttcggaagtgatttggataaagagtcagtgttcatagaa
gcacaagcgattgatcctttgcgaggcaataccgagcgattagtagatgagtttcgaagc
gcagcagatgctgggcaaactttaatttttgcagctcacggtcatggaatgcacgagcga
tattcgaatctttttagaagtgctgaaatatctgttcgagttgttacctccacaattgcc
tatggttttagcgtgccatctacacggattcttttcattagtgagcgagatttatctggc
agcaaaggtgcaattaataacaccgaaaaactgccatcaaagcgtaagactgctatcgat
ccactggaattaaaagcaggcgattttgttgtgcacgaacaacacggcattggtagatat
atcgaattagtttcaagaagtgttgcaggagtaactcgtgaatatctggttcttgaatac
gcatctgccaaacgcgggcaaccaggagatcgaatctttgttcccacagattctctcgag
caagtaagtaaatatgtgggtggtgaaactccaactgttcaccgaatcggaagtggtgaa
tggcaaaaggctaagggtcgggcgcgtaaagctgtgcgtcaaattgctggagaacttatt
cgtttatatgccgctcgcacttcttctcctggttttgcattctcacctgacacgccgtgg
caacgcgaactagaagattcctttgcatatatcgaaactccagatcagctctcaacaatt
aatgaagttaaagcagatatggaacgtccatacccgatggatcgaattgtttgtggcgat
gtgggatatggaaagactgagattgcaatccgcgctgcatttaaagctgtgcaagatggt
aagcaagttgcagttttggttccaactacattgcttgtgcagcaacatacaaagacattc
atcgagcgatattccggatttccaatcaaggtcgccggactatctcgatttaacaccgca
aaggagagcaaagaaattttggcaggtatggaagccggagcccttgatgtggttgttggc
acccatcgaattctttctaatgatgtgcgctttaaggatttaggattagtcgtcgtcgat
gaagaacaacgctttggcgttgaacagaaagaatcccttaagaaactgcgcacaaccgtg
gatgttttagcgatgtccgcaacgccaattcctcgaaccttagagatggctgttacaggt
attcgtgagatgtccacgattacaactccaccggaagagcgccatccaattttgacttac
gtaggagcgcgcgatgatgcacaaataaccgctgcaatccatcgtgagttgttgcgagat
ggtcagattttttatattcacaatcgagttgaatcaattgatcaagcggcacaaaaacta
caaacacttgtacctgaagcacgtattcgtatcgcgcacggtcagatgagtgaaggcgca
cttgaagatgtgattcttgctttttggaatagagatttcgatgttttggtgtgtacgaca
attgttgaaagtggtttagatatcgcaaatgccaacacgttgattgtggaacgtgctgat
ctctttgggctctctcagcttcatcaacttcgtggtcgtgttggtcgtggacgcgaacgt
gcttacgcatacttcctatttccaccagatcaaccattaagtgagttagcacatgatcga
cttaaaaccattgctgccaacaccgaactcggtgcaggtatgcgcgttgcacttaaggac
cttgaaattcgtggagcaggaaatttactaggtggtgaacaatcaggtcacattgctgac
gttgggtttgatttatacatgcgcatggttggtgaagcagtacatgagtacaaatctgga
ataattgaaacttcagaaccaaaccatgaatgtaaagtggaattgccaattaacgctcat
ctagatgctgcctatgtaacgggtgagcgtttgcgcttagatctttatcgtcgactagca
gatgttcgaaaccgcgaagatgttgatgcgatagaagaagagttgatggatcgcttcggt
gcacttccacaagaagcacagacgcttctaggtgttgccgcacttcgtgcttttgcaaag
agcatttcattgcgcgaagttgttgcccaaggaaaatttgtacgactatcgcccataagt
ttgcctgaatcgaaacaaataacattggctcgcttgtatccaggatcactctataaatcg
gcatcatcaacggttttagtggctttgcccaagagctctgcgtggaatccgtcagaaagt
actgctccgatagtggatacttctcttctggcttgggtaacacaggtagttaccgaattg
gcaccaacgtcgaaaggcagttcatcgtga
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