Planococcus sp. PAMC 21323: Plano_0023
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Entry
Plano_0023 CDS
T03510
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pln
Planococcus sp. PAMC 21323
Pathway
pln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Plano_0023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pln03021
]
Plano_0023
03400 DNA repair and recombination proteins [BR:
pln03400
]
Plano_0023
Enzymes [BR:
pln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Plano_0023
Transcription machinery [BR:
pln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Plano_0023
DNA repair and recombination proteins [BR:
pln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Plano_0023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AIY03988
UniProt:
A0A0B4R7C1
LinkDB
All DBs
Position
19456..23010
Genome browser
AA seq
1184 aa
AA seq
DB search
MVGQLVQYGQHRQRRSFSRISEVLDLPNLIEIQSSSYEWFLEEGLREMFRDISPIEDFTG
NLSLEFVDYSLAEPKYPVDESKERDVTYAAPLRVKVRLHNKETDEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFHDKTDKNGKKGFGATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGDNEFLQNTLEKDNTESTEKALLEIYERL
RPGEPPTVESAKSLLYSRFFDPKRYDLANVGRYKMNKKLHIKNRLFNQTIAETLADPETG
EILVEAGTLIDRRVLDRLIPNLENGVGFHTVSQVGGVLEGEVTLQSIKIYAPNNEDQKEI
TVISNAYIEDKIKNVTPADIISSISYFFNLLYGVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTQAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINTLSTFAKVNKFG
FIETPYRRVDSETGLVTEQIDYLTADEEDNYVVAQANSKLNDDGSFVEEGIVARFRGENT
IYKRGSIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHLAARDSGAAVVAKHDGIVEFVEAKEISVRRIENVDGSEVRGDLDTYRLQKFVRSNQG
TSYNQRPIVKVGDRISKRDILADGPSMERGEMALGRNVLVAFMTWDGFNYEDAIIMSERL
VKDDVYTSVHIEEYESDSRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKIFNREDGDEL
PPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMASRSLGIHMASSVFDGANEEDVLETMEESGMPRDGKTILYDGR
SGEAFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPSVPESFKVLIKELQSLGMD
VKMLTIDDEEIELRDLDEEEDLQPADSLNILPIADTEAPVGTID
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttggtaggtcaactagttcagtacggtcaacatcgtcaacgcagaagtttttcgagaatc
agtgaagtgctggatcttccgaacttgattgaaattcaatcatcatcttatgaatggttt
ctcgaagaaggacttcgcgaaatgttccgagatatctcgccgattgaagatttcacagga
aatctatcgctcgagtttgttgattacagtctcgcggaaccgaagtatccagtcgatgaa
tcgaaagagcgcgacgtaacttatgcagcacctttgcgtgtgaaagtacgtctgcacaac
aaagaaacagatgaagtaaaagagcaagatgtcttcatgggagatttcccgttaatgaca
gaaacaggtacgtttgttatcaacggagcagagcgcgttatcgtttcccaattggttcgt
tctccaagtgtttatttccatgacaagacagataaaaatggtaaaaaaggctttggagca
actgttattccaaaccgtggagcatggttggaatacgaaacagatgcaaaagatgttgtc
tatgtcagaattgatcgcacacgtaaattgccggtaacggttcttttaagagcgcttggt
tttggatctgaccaagaaatcatcgatttacttggagataacgaatttcttcaaaacaca
cttgaaaaagataatacagaaagcacagaaaaagcgcttcttgaaatttatgagcgtctg
cgccctggtgagccaccgacagttgaaagtgcaaagagcctgttatactcacgctttttc
gacccaaaacgctatgacttagcaaatgttggtcgctataaaatgaacaaaaagcttcac
attaaaaaccgtcttttcaatcaaacaattgccgaaacgttggcagatcctgaaacaggc
gaaattttagttgaagcaggcacattaattgaccgtcgtgtacttgatcgtttaattcca
aacttagaaaacggtgttggtttccacacagtttctcaagtaggtggggttttagaaggt
gaagttactttgcaatcgattaaaatttatgcgccaaacaatgaagaccaaaaagaaatc
actgttataagcaatgcttatatagaagataagattaaaaatgtaacaccagctgatatc
atttcttctatcagttacttctttaaccttctttacggtgttggaaacacagatgatatc
gatcatcttggtaatcgtcgtttacgttcagtaggcgaacttttacaaaaccaattccgt
attggactatctcgtatggaacgcgtagtgcgtgaacgtatgtcgattaatgatacacaa
gcaatcgttcctcagcaattgatcaatatccgtccggttattgcatcaattaaagagttc
ttcggtagttctcagctttctcagttcatggatcaaacaaatccattagctgaattgaca
cacaaacgccgtctgtcggctcttgggcccggtggtttaacgcgtgaacgcgcaggcttt
gaagtacgtgacgttcactattcacattatggtcgtatgtgtccgattgaaacgcctgag
ggcccgaacattggattgatcaatacactttcgacatttgcgaaagtaaacaagtttggt
ttcattgaaactccttatcgtcgcgtagattctgaaacaggtcttgttactgaacaaatt
gattacttgaccgctgatgaagaagataactatgtagtagctcaagccaactcgaaattg
aatgacgatggatcattcgtcgaagaaggcattgtggcacgtttccgcggagaaaacaca
atttacaaacgcggcagcattgactatatggacgtttctcctaaacaggtcgtttctgta
gcaacagcttgtatcccgttccttgaaaacgatgactctaaccgagcattaatgggagcg
aacatgcaacgtcaagcggttccgttattaaatccagaagctcctttcgtaggaactggg
atggaacatttggcggcgcgtgattctggtgcagctgtcgtagcaaaacatgatggtatt
gtagaatttgtggaagctaaagaaatctcagtacgccgcattgaaaatgtggatggtagt
gaagtccgaggcgaccttgatacgtaccgattgcaaaaattcgttcgttctaaccaagga
acaagttataaccaacgcccaatcgttaaagttggagaccgtatttctaaacgcgatatt
ctagccgatggaccttcaatggaacgcggagagatggcattaggaagaaacgtattggtt
gccttcatgacatgggatggttttaactacgaagatgcaattatcatgagtgaacgttta
gtgaaagacgatgtttacacatctgttcatattgaagagtacgagtctgattcacgagat
acaaaactaggaccagaagaaattacgcgcgacatcccgaacgttggagaagacgcatta
cgtaatttggatgaccgtggaattatccgtgtcggagctgaagtaaaagatggagatatt
cttgttggtaaagtaacacctaaaggagttacagaactaactgctgaagaacgtctttta
catgctattttcggcgaaaaagcacgcgaagttcgcgatacttcattgcgagtgcctcac
ggtgctggcggtattgtattggatgttaaaatcttcaaccgtgaagatggagatgaacta
ccaccgggtgttaatcagttagtccgcgcatacatcgttcagaaacgtaaaatttctgtt
ggtgataaaatggccggacgtcacggaaacaaaggtgttatttcaagaattctacctgaa
gaagatatgccgtttatgcctgatggcacgccagtcgacattatgttgaacccacttggt
gtaccttctcgtatgaatattggtcaggtacttgaattgcatcttggaatggcttctcgt
tcacttggaattcatatggcttcgtctgtatttgatggagcgaatgaagaagatgtgttg
gagacaatggaagagtcaggtatgccacgtgatggtaaaacgattctctatgatggccgt
tctggtgaagcattcgataaccgtgtgtctgtaggaatcatgtacatgatcaaacttgcc
cacatggttgatgataaattgcacgctcgttcaactgggccgtactcattggttacacaa
cagccattgggtggtaaagcacaattcggtggacaacgttttggtgagatggaagtatgg
gcacttgaagcatatggtgctgcacatacattacaagaaatcttaacagtgaaatcggat
gatgttgtaggtcgtgtgaaaacttatgaagcaattgttaaaggtgaaagtgtaccggaa
ccaagtgtaccggaatcatttaaagttttaatcaaagagcttcaaagtttaggtatggac
gttaaaatgttaacgattgacgatgaagaaattgagttgcgcgatttggatgaagaagaa
gatcttcaaccagcagactcattaaatatcttgccgattgcagatacagaagcaccggtt
ggaacaattgattaa
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