Perognathus longimembris pacificus (Pacific pocket mouse): 125343516
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Entry
125343516 CDS
T08928
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013
Nucleocytoplasmic transport
plop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125343516 (Upf3b)
03015 mRNA surveillance pathway
125343516 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125343516 (Upf3b)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125343516 (Upf3b)
mRNA cycle factors
P-body specific factors
125343516 (Upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
125343516
NCBI-ProteinID:
XP_048191942
LinkDB
All DBs
Position
X:24861988..24879429
Genome browser
AA seq
488 aa
AA seq
DB search
MKEDKEHRPKEKRVTLVTPQGATGGGGGGGGGGGGGTSGEGAKGDDRQDRNRDRKEAMSK
VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD
RFDGYVFLDNKGQEYPAIVEFAPFQKAAKRKTKKRDTKVGTIDDDPDYRKFLESYATDEK
MTSTPETLLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEER
RKWKEEEKRKRKDIEKLKKIERVPEREKIKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEK
ELDKREKPKKPDKENLSDDRASGQSCVLPKRPESELKDEKPKRLEEESCRDYRDRDYERE
QERMHRERERLKRQEEERRRQKERYEKEKAFKRKEEELRKEREALRDKGKKIESTESISS
SEKIEKKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDGAKCGDPAIEKKQESGIS
HRKEGGEE
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggagcacaggcctaaggagaagcgagtcaccctggtaacgcctcag
ggggccaccggcggcggcggtggcggcggtggcggcggtggcggcgggacttcaggggaa
ggcgctaaaggggacgatcgacaggatcgcaaccgggacaggaaagaggctatgagcaag
gtggtaattcgaagattacctcccactttgaccaaggagcagcttcaggagcatcttcaa
cctatgcctgagcatgattattttgagtttttttctaatgatactagtctgtatcctcat
atgtatgccagagcatacatcaactttaaaaaccaagaggacattattttattcagggat
cgctttgatggttatgtgttccttgacaataaaggtcaggaatatcctgctatagtagaa
tttgcaccttttcaaaaagctgcaaaaaggaagactaagaaaagagataccaaagttgga
actattgatgatgatccagactacagaaaatttttggagagttatgccacagatgagaaa
atgacatcgactccagagacattactagaggaaatagaagccaaaaatagagaattaata
gccaaaagaacaacaccacttttgagctttctgaaaaacaagcagagaatgagagaagag
aagagggaagaaagacggagacgagaaatagaaagaaaacgacaacgagaagaagaaaga
aggaaatggaaagaagaggagaaacgcaaaaggaaagatattgaaaagctaaagaagata
gaaagagttccagaaagagaaaaaataaaggatgaaccaaagatcaaggtacacaggttt
ctgttacaagctgtgaatcagaaaaatctgctcaagaaaccagaaaaaggagatgaaaag
gaattggacaaaagagaaaaacctaaaaagccagacaaggagaatttgagtgatgacaga
gccagtgggcagagttgtgtgctgcccaaacgtcctgagagtgaactgaaagatgaaaag
ccaaagagactagaagaggagagttgccgagactacagggaccgagattatgaacgagaa
caggagcgcatgcaccgagaaagagagaggctgaagcgtcaagaagaggaacggcggaga
caaaaggaacgctatgaaaaagagaaagctttcaaaagaaaggaagaagaacttaggaaa
gagcgagaagcacttcgcgacaaaggaaagaagattgaaagtactgaatcaataagcagc
tcagagaaaatcgaaaagaaagaggaagtggttaagagagatcgcataagaaacaaggat
cgtccggcaatgcagctttaccaaccaggagcccggagccgaaatcgactctgccctcca
gatgatggtgccaagtgtggagatccagcaatagaaaagaagcaggaaagtggtattagc
catagaaaagaaggaggagaagagtga
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