Perognathus longimembris pacificus (Pacific pocket mouse): 125353525
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Entry
125353525 CDS
T08928
Name
(RefSeq) valine--tRNA ligase, mitochondrial-like
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
125353525
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
plop01007
]
125353525
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plop03016
]
125353525
Enzymes [BR:
plop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
125353525
Amino acid related enzymes [BR:
plop01007
]
Aminoacyl-tRNA synthetase
Class I (U)
125353525
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
125353525
Prokaryotic type
125353525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
tRNA-synt_1
Anticodon_1
Tfb2_C
tRNA-synt_1g
tRNA-synt_1_2
Helicase_C_3
tRNA-synt_1e
tRNA-synt_1f
Motif
Other DBs
NCBI-GeneID:
125353525
NCBI-ProteinID:
XP_048205181
LinkDB
All DBs
Position
6:complement(14354012..14374301)
Genome browser
AA seq
1619 aa
AA seq
DB search
MENTPSARGGLNRVHLQCKNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMR
MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNL
RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQL
LSQAGLMKSSEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLF
QLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAA
GGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIAS
GITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD
FELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHTRGWGAGAGGRSLRTPA
HVVGRPRGPARHAAKAPGLLLGAASVHHPLNPRAAALGARCQGRLHGAACAVPQPSRRAA
RGRQEIKGCDSPRAPPMPHVPLTSFRPPLWGLRPARGLGRPRSLSTHSEPHGPSLSRRNR
EAKQKRLREKQEALGAAVTRKSKSPAESSKAWSPKEIVFYEVPTEPGEKKDVSVPLPPAY
SPRYVEAAWYPWWVREGFFKPEYQTRLPQATGKTFSMCIPPPNVTGSLHIGHALTVAIQD
ALVRWHRMRGDRVLWIPGSDHAGIATQAVVEKQLWKERGVRRHELGREDFLREVWQWKEK
KGGEICEQLRTLGASLDWDRECFTMDAGSSVAVMEAFVRLYNAGLLYRNRQLVNWSCALR
SAISDIEVENRPLPGRTELRLPGCPTPVSFGLLVSVAFPVDGEPDAEVVVGTTRPETLPG
DVAVAVHPGDCRYTHLHGRHLRHPLTGQLLPLITDPAVQPQVGTGAVKVTPAHSPADAEM
AARHGLSPLTVIAEDGTMTSLCGDWLQGLHRFVAREKIMCALRERGQFRGLQDHPMVLPM
CSRSGDVVEYLLKSQWLVRCQEMGERAAQAVESGALELCPSFHQKSWQHWFAHIGDWCVS
RQLWWGHRIPAYLVTEGHEKQDDKKDCWVVARSEAEARQAAAELTGRPGTELTLERDPDV
LDTWFSSALFPFSSLGWPQKTPDLAHFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPF
SKVLLHSMVRDRQGRKMSKSLGNVLDPRDIISGVELQVLQTKLRDGNLDPAELAFAAAAQ
KKDFPHGIPECGTDALRFALCSQAVLGGDLHLSVSEVLSCRHFCNKIWNALRFILNALGE
NFVPQPSEELSPTSPVDAWILSRLALAASECERGFLSRELSVVTHTLHHFWLHNLCDVYL
EAVKPVLLRKPRPPEPPQVLFSCADIGLRLLAPLMPFLAEELWQRLPQRPGGLSAPSICV
APYPSAHSLEHWRQPELEQRFSRVQEVVQMLRALRATYQLTKARPRVLLQTVEPGEQGLF
QDFLEPLGTLSHCGAVSILPPGAAAPAGWARAALSDTVQVHMELQGLVDPQTQLPRLAAR
RLKLQKQLDGLRAWTPSEGEADTQKQHRLSALQLELSKLDQAASHLQQLMDEAPSPREL
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaccccctctgcaaggggtggactcaacagggtgcacctacaatgcaagaat
cttcaggaattcctggggggcctgagtcctggggtattggatcgtttatatgggcaccct
gccacttgcctggcggtcttcagggagctcccatctctggctaagaactgggtgatgcgg
atgctctttctggagcagcctttgccgcaagctgccgtggctctgtgggtgaagaaggaa
ttcagcaaggcccaggaggaaagtacagggctgctgagtggcctccggatctggcacacc
cagctgctcccaggtggcctccagggcctcatccttaacccagtcttccgccagaacctc
cgaattgcccttctgggtggggggaaggcctggtctgatgacacaagtcagctgggacca
gacaagcatgctcgggatgttccctcacttgacaagtacgccgaggagcgatgggaggtg
gtattgcacttcatggtgggctcccccagtgcagctgtcagccaggacctggctcaactc
ctcagccaggctgggctcatgaagagtagtgaacccggagagccaccctgtattacttct
gctggattccagttcctgttgctggacacccctgcccagctgtggtactttatgctgcag
tatctgcagacagcccagagccggggtatggatctggtagagattctgtctttcctcttc
cagctcagcttctctactctaggcaaggattactctgtggaaggtatgagtgattctttg
ttgaacttcttgcaacatctgcgtgagtttggacttgttttccagaggaagaggaaatcg
cggcgttactaccccacacgcctggccatcaacctttcatctggggtctctggggctgct
ggaggtactgtgcatcagccaggcttcattgtcgtggaaaccaattaccggctatatgcc
tacacagaatcagagctgcagattgccctcattgccctcttctctgagatgctctatcgc
ttccccaacatggtggtggcacaagtgacccgggagagtgtgcaacaggccatagccagt
ggcatcacagcccaacagataatccatttcctaaggacaagggcccacccagtgatgctc
aaacagaccccggtgctgccccccaccatcacagaccagattaggctatgggagttggaa
agggacagactccgattcactgaaggcgtcctgtacaaccagttcctgtcgcaagtggac
ttcgaactgctgctggcccacgcgcgggagctgggcgtgctggtgttcgagaactcggcc
aagcggctcatggtggtgaccccggccgggcacagcgacgtcaagcgcttctggaagcgg
cagaagcacactcgggggtggggggcgggggcgggagggcggtcgctgcggaccccggcc
cacgtggtggggaggccgcgcgggccggccagacacgctgcaaaggcgccaggcctgctc
ctaggggccgcgagtgtccatcatcccctgaatccccgagccgccgccctcggtgcccgc
tgtcagggccgactccacggcgcggcctgcgcggtaccccagccctcgcggagggctgct
agggggaggcaggaaataaaggggtgtgactccccgcgcgcgcccccgatgcctcacgta
cccctgacctcgttccggcccccactgtgggggctgaggcctgcacgcggcctggggcgg
ccccgctccctttccacgcactccgagccccacggcccctccctctctcggaggaaccgg
gaggccaaacagaaacgcctgcgggagaagcaggaggcgctgggagcggccgtaacccgg
aaaagcaagtcacctgcagagtccagtaaggcatggagtcctaaggagatagtattttat
gaagtcccaacagaacccggtgaaaagaaagacgtgtcagtacccttgcctcctgcttac
agcccccgatatgttgaggctgcttggtacccctggtgggtgcgagagggcttcttcaaa
ccagaataccagacgaggctgccccaggctacgggaaagaccttctccatgtgtatccca
cctcccaatgtcactggctctctgcacatcggccatgcactgacagtggctatccaggat
gccctggtgcgctggcatcggatgcgtggggatcgggtactgtggatccctggctcagat
catgcaggaattgccacacaagctgtggtggagaaacaactgtggaaggagcggggagtg
aggaggcatgagctgggccgggaggacttccttagggaggtgtggcaatggaaggagaag
aaaggaggagagatctgtgagcagttgcgcactctgggggcctccttggactgggaccgg
gaatgctttaccatggatgcgggttcttcagtggctgtgatggaagcttttgtgcgactc
tacaacgcagggttgttgtaccggaaccgtcagcttgtcaactggtcatgcgctttgaga
tcagccatctcagatattgaggtggagaaccggcctctgccagggcgcacagaactccgg
ctgcctggctgccccacccctgtgtcttttggcctccttgtttctgttgccttccctgtg
gatggcgagcctgacgcagaggtggtggtgggaaccacaagaccagaaacattgcctgga
gatgtggctgtggctgttcaccccggtgactgccggtacacacatctgcatggacgacac
cttcgtcaccccttgacggggcagcttctccccctcatcacagaccctgcagttcagccg
caggtgggcacaggagcagtgaaagtcactccggctcacagtcctgctgacgctgagatg
gcggcccgccatggcttgagccccctgactgtcattgcggaggatggaaccatgacctcc
ctctgcggggactggctgcagggtcttcaccgatttgtggcccgggagaagattatgtgt
gccctgagggagcggggccagttccggggcctccaggaccaccctatggtactgcccatg
tgcagccgctctggggatgtggtggaatacctgttgaagagccagtggttagttcgctgc
caggagatgggggagcgagctgcccaggctgtagagtctggggccttggagctgtgtcca
tccttccaccagaagagctggcagcactggttcgcccacattggggactggtgtgtctct
cggcagctgtggtggggccatcggattccagcctacctcgtcactgaggggcatgagaag
caggatgacaagaaggactgctgggtggtggcgcggtccgaggccgaggccaggcaggca
gcggcagaactgaccggaagaccagggacggagctgaccctggagagggaccccgatgtc
ctggacacttggttttcttctgctctcttccccttttcttccctgggctggccccaaaag
accccagaccttgcacatttctaccccctgtcacttttggaaacgggcagtgacctcctg
ctgttctgggtgggtcggatggtcatgctggggacccagctcacggggcagctccccttc
agcaaggtgctccttcattccatggtgcgggacaggcagggccggaagatgagcaagtcc
ttggggaatgtgctggacccccgggacatcatcagtggtgtggagctgcaggtgctgcag
accaagctgagagatgggaacctggaccccgcggagctggccttcgcagctgcagcgcag
aaaaaggactttcctcatgggatccccgagtgcgggacagatgccctgagattcgcactg
tgctcccaggcagtgctggggggcgacctgcacctgtctgtctccgaggtcctgagctgc
cgccatttctgcaacaagatctggaatgccctacgttttattctcaatgctctaggggag
aattttgtaccccagccttcagaggagctgtctcccacctctcctgtggacgcctggatc
ctgagccgcctggcccttgctgccagcgagtgcgagcggggcttcctctcccgggagctc
tcagtggtcacccacaccctgcatcacttctggctccacaacctctgtgatgtctacctg
gaagctgtgaagccagtgctgttgcgcaagccccgtccgcctgagccacctcaggtcctg
ttctcctgcgcagatatcggtctccgcctcctggccccgctgatgcccttcctggctgaa
gagctctggcagaggctgccccaaaggccaggcggcctctccgcccccagcatctgtgtt
gcaccctatcccagtgcccacagcttggagcactggcgccagcctgagctagagcagcgc
ttctcccgggtccaggaagtggtgcagatgctgcgagctcttcgagccacctaccaactc
accaaagcccggccccgagtgctgctgcagaccgtggagcccggggagcagggcctcttc
caggacttcctggagccgctgggcacgctgagccactgtggagctgtgagcatcctgccc
ccaggcgcagcagcccccgcaggctgggcccgggctgccctcagtgatactgttcaggtc
cacatggagctgcagggcctggtggaccctcagactcagctacctcggctagccgcccga
agactcaagttgcagaagcagcttgatggcctcagggcctggaccccgtcagaaggggag
gcagacacacagaagcagcatcggctttccgctctccagctggagttgtcaaaactggac
caggccgcctctcacctccagcagctgatggatgaggctcccagccccagggagctttga
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integrated database retrieval system
