Perognathus longimembris pacificus (Pacific pocket mouse): 125355265
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Entry
125355265 CDS
T08928
Symbol
Frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125355265 (Frem1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
125355265
NCBI-ProteinID:
XP_048207492
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All DBs
Position
1:complement(115930287..116064953)
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AA seq
2200 aa
AA seq
DB search
MNAPSWAGPKALLLLLLLDWASPTFITVNRGMRVMKGSSAFLSADDLKFAITREKDACKV
EVVRNEPITQRVGKLTPQVFDCHFLPNEVRYVHNGCPILDEDTVKLRLYRFTETDTFTET
FELRVHLLEPDCNIIHMSDSELEVSEFYGLSKAIDKNLLRFDYDRTASMECTIRLDPVRT
LLPAHGQMVVVEPLPEGPRGDQPHGFFPKSQLGIELKCLGGSCALGLKKIGSLKVSCEEF
LLMGLRYQHMQPPSPNIDYIPIQLDLVDSRSKSVYKSERAWLPVSIRAGVSNQIPRAAFM
AMFILEVDQFILTSLTTSVLDCEEDETPKPLLVFNITKAPPLGYVTHLSDHTRPVSSFTW
KDLSDLQIAYQPPNSSHSERRHYEVELEVLDFFFGKSAPIVVHISIRTADTNAPRVSWNT
GLSLLEGQSRAITWEQFQVVDNDDIGAVQLVTVDGLQHGRLTVRGEKGFLFTVADLQAGV
VRYHHDDSDSTKDFVVFRIFDGHHSTRHKFPINILPKDDSPPFLITNVAIELEEGQTVLI
QGSMLRASDMDSSDDYIFYNITKPPKAGEIMKKPGPGLIGYPVLGFLQRDLFNGIIFYRH
FGGEVFEDSFEFVLWDSHESPNLSVPQVMTIHITPVDDQLPKEAPGVSRHLVVKETEVAY
ITKKHLHFLDMESCDRELLYTVTMPPFFSSGHRYSDAGKLFMVDSIPKLTKTPLALGLRS
FTQHAVNHMKVAYMPPMQDIGPHLQHVQFTVSISNQHGGTLHGICFNITILPVDNQVPEV
FTNALRVAEGGQCIMDTEHIRVSDVDTLPDSIYLSLAGTPLSGRVELNGFPLNPGDTFSW
GDLHTLKVRYQHDGSEVLQDDICLEVTDGTNSAEFILHVEVFPVNDEPPVLKDDLMTVMP
CLEGGEVVITPEYICATDMDSDDLKLVFIITQEPQHGVVRKAGVRVDRFSQADVISGTVT
YKHTGGEIGLVPCFDTITLAVSDGEASPVISGCCYHGPDPSVSLHEAFPVYDLNITVHPV
DNQPPSIAIGTMFVVDEGFSAALTMNHLSVTDPDTATDDLQFVLVSPPQFGYLENTLPSV
GFEKSNMGISIASFQWRDMKSLHINYVQSRHLRLEPTADQFVVYVTDGMRRSSATPFYIQ
INPTNDEAPDFVVQNITVCEGGRVELDSSIISAVDLDIPKDHLLFSITQKPHHGLLIYGE
HSENSPPNNQPANAHQKHELIYNFSMERLKTGLKLSYVHDGSEGLADEFAIQVSDGKHKI
LKTVSVEVSPINDEKPTLSKKAEMVVNVGDTRILSSAILSAIDKDSPREKIYYVFEKLPQ
NGQLQLKIGRDWIPLSSGMKCTQEDVDLNFLRYTHTGTIVSHNQDSFTFYLWDGDNRSPA
FECHIIIKDMEKGDIVILAKPLVVSKGDRRILTTSTLLAVDATDKPKDLFYVITSPPRYG
QVEYVRYPGVPITSFSQMDIAGQTVCYVHKSKAAGCHDSFRFIISNGLQTKHGVFEITLE
TVDRTLPVVTRNKGLRLAEGAMILLSPDLLQVTDPDTSAAHLTFILGQLPQHGQLYLRGS
VLIQPNFTQQDVDSGKVAYQHSGDHSHTDFFTFLVTDRTNRGFVVDGRVQEEPVPFTIQV
DQLDKTAPRITHLHFPSQVNFLKNGCYGIYITSHVLKASDPDTKDDEIIFKILQGPRHGH
LENTTTGEFIHEKFSQKDLNSKTILYIINPSLEVNSDFMELQVTDPTGNSATPQILELKW
SHIEWSQSEYEVCENVGMLTLEVTRKGYSMDSAFVSIKVNQVSATVGKDFTMTPSKLIQF
DPGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGKKTKAAVKILDSKGGLCQTSYS
SNHSQHKAWEKGIWPLLPSGSSSSMAGGFPHLERRYPSSSKQLVVTKGGTLRGFDAAVLS
QRKLRTHGNGKAVLPSSVYKNGTDIIYNYHGVVSLRLENDSFPTHKRKATVSILSQPHRT
VKMAELPPADKAESTSASHFPRQNQSPSFSKNCTVEIKGLFHFEESNQQLYQCNGIAWTI
WSSKTKVGTQVEQLSTAELMEYSDLETEDKSCPARWHLHSGYCHTLITEQKGTWTMAMRA
CREQHLGNLVTVFSRQHMQWLWHISGRKPFWIGLNAQERAGCWEWIGGEPVAFTNWRRGR
PPNSRPGKNCVLVQKQGKWQTKNCRKGKPHNFICSWKLEM
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctccaagctgggccgggcccaaggccctgctgcttctgctgctcctggactgg
gccagccccacatttatcacagtgaaccgagggatgagggtgatgaagggcagctccgcc
ttcctgtctgcggatgacctgaagtttgccatcaccagggagaaagatgcctgcaaagtg
gaggtagtgaggaatgagccaataacgcagcgggttggaaagctcaccccgcaggtgttt
gactgccatttccttcccaatgaagtaaggtatgttcacaatgggtgtccaatccttgat
gaagacactgtgaagcttaggctttacagatttactgaaacagacaccttcactgaaacc
tttgagctgcgggtccatctcctggaaccagactgtaacatcatccacatgagtgacagt
gagctggaggtgtctgaattctatggcctgtccaaagccattgataagaacctgctcaga
tttgattatgacaggacagccagcatggagtgtaccatcaggctggaccccgtgagaact
ctgctgccagcccatggccagatggttgtggtggaacctcttccagaaggacctcgtgga
gatcagccacacggttttttccccaagtcccaactgggaatagaactgaagtgtctgggt
ggaagctgtgccttgggattgaagaaaataggaagtctcaaagtgagctgtgaggagttc
ctgctgatggggcttcgttatcaacatatgcagcccccctcacccaacatcgattacatc
cccatccaactggacctcgtggatagcaggagtaaaagcgtgtacaagtctgagagagca
tggttgcctgtctctatcagagctggcgtttcaaatcagattccaagggctgcgttcatg
gccatgtttattctggaagtggatcagttcatcctcacctctctgactacgtcagttctg
gactgtgaagaagatgagacccctaaacccttgctggtgttcaatatcactaaagctcct
cccctgggttatgtgactcacctgtcagatcacaccagacctgtctcctcattcacctgg
aaagatctcagtgacttgcagattgcctatcagccaccaaatagcagccattctgagagg
agacattatgaggttgagctggaggtgttggacttcttctttgggaagagtgcccctatc
gtagtccacatctccatccgaacagcagacaccaatgccccccgagtgtcctggaataca
ggtctgagcctcctggaggggcagtctcgggccatcacttgggaacagtttcaggttgtt
gacaatgatgacattggtgctgtccagttggtcacggtcgatggcctgcagcacggacgc
cttactgtaagaggggagaaaggattcctcttcaccgtggctgaccttcaagctggggta
gttcgctatcatcacgacgacagcgactccaccaaagactttgtggtcttcagaatattc
gatggccatcacagtacccgtcacaaatttcctatcaatatcttacccaaagatgacagt
cctccatttctcataaccaatgttgcgattgaactggaggaggggcagaccgtcctgatc
caggggtccatgctgagagcttcagacatggactccagtgatgactacatcttctataat
atcacaaagcccccaaaagctggagagatcatgaagaagccagggccaggactgataggc
taccccgtcctaggcttccttcagagggatctatttaatggaatcattttctatcgtcac
ttcggtggagaggtatttgaagattcttttgaatttgtcctgtgggatagccatgagtct
ccaaatctgtcagtgccacaggtgatgacaatccatatcactccagtagatgaccagctt
ccaaaagaggctcctggagtctctcggcacttggttgttaaggaaacagaggtggcctac
ataaccaagaagcatctacatttcctagatatggaatcatgtgacagagaactgctctat
acagtaacaatgcctccatttttctcctctggccacagatactcagatgctgggaagtta
ttcatggtggacagcataccaaagctaaccaaaacccctctagccctgggactgaggtca
tttactcagcatgctgtgaaccatatgaaagtggcctacatgccccccatgcaagatata
ggaccccatctccaacatgtccagttcacggtttccatcagtaaccaacatggtggcact
ttgcatgggatatgctttaacattaccattctcccagtggacaatcaagttcctgaggtc
ttcaccaatgctttgagagtggctgagggaggtcaatgcatcatggacacagagcacatc
cgcgtttctgatgtggacaccctaccagacagtatctacctctctctggcgggaacccca
ctgagtggaagggtggagctgaatggatttcctctaaatccaggggacacattttcttgg
ggagaccttcataccttaaaagttaggtatcaacatgatggatctgaggttcttcaggac
gacatatgtttggaggtcacagatggcacaaattcagcagaatttattctacatgttgag
gtatttcctgtaaatgatgagccaccagtcctaaaggatgacctcatgactgtgatgccc
tgcttagagggtggagaggtggttatcactcctgaatacatttgtgctactgacatggac
agtgatgacttgaaactggtgtttatcatcactcaagaacctcagcatggggtggtgagg
aaggctggagtgagagtggacaggttctctcaggcagatgttatttcagggacagtgaca
tacaaacacacaggtggtgagattggcttggtgccttgttttgacaccattacattggca
gtttcggatggagaagccagccctgttataagtggctgttgctaccacgggcctgatcca
tctgtttctcttcacgaggccttcccagtgtatgatctcaatatcacagtgcatccagta
gacaaccaaccaccttccattgccataggtaccatgttcgttgtagatgaaggcttctca
gcagcccttaccatgaaccacttgtctgtcactgaccctgacacagctactgatgacttg
caatttgttttggtttctccacctcaatttggctaccttgaaaacacactcccttctgtg
ggttttgagaaaagcaacatgggcataagtatagcttcatttcagtggagagatatgaag
tctttgcacattaactatgtgcagtccaggcatctgaggctagaaccgacagctgaccag
ttcgtggtctatgttacagacgggatgcgacgctcctcggcaacaccattttacattcaa
atcaaccccacaaatgatgaggctcctgactttgtagtgcagaacattaccgtgtgtgag
ggtggaagggtagagctggattcttccatcatcagtgctgttgacctggacattcctaag
gaccacttactattcagcatcactcagaaaccacatcatggcctcctcatctatggggaa
cacagtgaaaactctcctccaaataaccagccagccaatgctcaccagaaacatgaactc
atttacaacttttccatggaacgtctcaagactggactgaagctgtcatacgtgcacgat
ggctctgagggcctggctgacgagtttgcaatccaggtgtcagatgggaaacacaagata
cttaaaactgtgtcagtagaggtatccccaatcaatgatgagaaaccaacattaagcaag
aaggctgaaatggtggtgaatgtgggtgatactcgtatcctgtcaagtgctatactttct
gccatagataaagactctcccagggagaagatttactatgtatttgaaaagcttccccaa
aatggacaacttcaacttaagatagggagggactggatccctctctcctctggcatgaaa
tgtacccaggaggatgtggatctgaactttctgagatacacacacacaggaacaattgtt
tcccacaaccaagatagcttcaccttctacctctgggatggtgacaacagatcacctgca
tttgaatgtcacatcatcattaaggatatggaaaaaggtgacattgtcattcttgcaaaa
ccactggtggtgtctaaaggtgaccgaaggattctgacaacctccactctcctggctgtg
gacgcaacagacaagcccaaggacctgttctacgtcatcacttccccaccccggtatggc
caggtggaatacgtccgctatcctggggtccccatcacaagtttcagccaaatggacatt
gcaggacaaacagtttgctacgttcataagagcaaggcagctggctgccatgacagcttt
agattcatcatcagcaatggactgcagacaaagcatggggtgtttgaaatcacactggag
actgtggacagaaccttgcctgtggtgaccagaaacaaagggctgaggttggctgaaggg
gccatgattcttctctccccggatctcctccaagtgactgacccagacacatcagctgca
cacctcaccttcatcctaggtcagctcccacagcatggccagctgtacctgagggggtca
gtgctgatccaacccaacttcactcagcaggatgtggacagcgggaaggtggcctatcag
cactcaggagatcactcccacacggacttctttactttcttagtcacagatagaacaaac
cgtggctttgttgtggatgggagagtgcaggaagagcctgttccattcaccattcaggta
gaccagttggacaaaacagccccccggatcacacatttgcatttcccttctcaagtgaac
ttcctaaaaaatggttgttatggaatttacatcacttcccatgtgctgaaggcatccgac
cctgataccaaggatgatgagattatctttaagattttacaaggcccacgacatggacat
ctggagaacacaacaacaggtgaatttatccatgagaaatttagccaaaaggacttgaac
agtaaaaccattctttacatcataaacccatctttggaagtaaattcagatttcatggaa
cttcaagtcaccgaccccacagggaactctgcaacccctcaaattttggagttgaagtgg
tctcatattgaatggtcacagtctgaatatgaagtctgtgagaatgtaggtatgttgacc
ttggaagttaccagaaagggctattcaatggattcagccttcgtgagcataaaggtcaac
caagtgtcagcgacagttggaaaagatttcacgatgactccatccaaactcattcagttt
gatccaggaatgtcaactaagatgtggaatatagcaattacctatgacggattagaggaa
gatgatgaggtctttgaagtaattctgaactcccctgtgaatgcagttcttggcaagaag
acaaaagctgcagtgaaaattttggactcaaaaggaggactgtgccagacttcctattcc
tccaaccacagccagcacaaagcatgggagaagggcatttggcccctgttgccttctggc
tcctcgtcatccatggctggtggtttccctcatctggagagaagatacccttcatcttct
aagcagctagtggttaccaagggaggcaccctgcggggctttgatgctgcagttctttct
caaaggaagcttaggacccatgggaatggcaaggcagttttaccatcctctgtttataaa
aatggaacagacatcatctataattaccatggagtggtttctttgagactggagaatgac
agttttcccactcacaaaaggaaggctacagtatccattcttagtcaaccacaccggaca
gtcaagatggcagagctgccaccagcagataaggctgaatccacaagtgcctcacacttc
cccagacagaaccagtcgccatcattctcaaagaattgcactgtggagataaagggactc
ttccattttgaagaaagtaaccagcagctctatcaatgtaatggaattgcatggactatc
tggagctccaaaaccaaggttgggacccaggttgagcagctgagcactgctgagctgatg
gagtacagtgatctggagacagaagataaatcctgcccagctagatggcaccttcactca
ggttactgtcataccttgattacagaacagaagggcacctggaccatggctatgcgagct
tgcagggaacaacacctgggcaaccttgtcactgtattctccagacagcacatgcagtgg
ttgtggcacatcagtggaagaaagcccttttggataggactgaatgcccaagagcgtgct
ggctgctgggagtggattggtggtgagcctgttgctttcaccaactggaggagaggacgt
cctccaaactcaaggcctggaaagaattgtgttttggtgcaaaaacaagggaaatggcaa
acaaagaactgtagaaagggcaaacctcacaattttatttgctcctggaaacttgaaatg
taa
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