Perognathus longimembris pacificus (Pacific pocket mouse): 125360666
Help
Entry
125360666 CDS
T08928
Symbol
Col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125360666 (Col22a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125360666
NCBI-ProteinID:
XP_048214653
LinkDB
All DBs
Position
12:3350726..3519214
Genome browser
AA seq
1600 aa
AA seq
DB search
MPGPRGSAVACLLGALLLLLWGGDGGCQAQRAGCKSVHYDLVFLLDTSSSVGKEDFEKVR
QWVANLVDTFEVGAERTRVGVVRYSDRPATAFELGRFGSREEVKAAARRLAFLGGHTRTG
DALRFVTARSFSARAGGRPGDPGVQQVAILLTDGRSQDLVLEAARAAHAAGIRLFAVGVG
AALREELDEIASQPTAAHVFHVSDFDAIDRIRGKLRRRLCENVLCPSVRVEGDRFKHTSG
GTQEITGFDLMDLFSVKEILGERENGAQSSYVRMGSFPVVQRTEDVFPQGLPDEYAFVTT
FRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKAVEYNAVGALKDAVRVVFRGPRVND
LFDRDWHKMALSIQAQNVSLYIDCALVQTLPIEERENIDIQGKTVIGKRLYDSVPIDFDL
QRIVIYCDSRHAEVETCCDLPSGPCQVTVVTEPPPEPPQPPTPGSEQIGFLKTVNCSCPA
GEKGERGFGGPVGLPGPKGDTGAAGLMGAPGPKGEKGDMGRGPFIQGEKGEKGSLGPPGP
PGRDGSKGVRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGHLGAPGLQGERGERGTRGE
KGERGLDGFPGKPGETGEQGRPGPPGVPGPPGEKGDAGPAGPPGVPGSVMQQEGLKGEQG
APGPRGHQGPPGPPGAPGLIGPEGKEGTPGLQGLRGKKGDAGPPGPPGALGLQGPPGPPG
VPGPPGPGGPPGLPGEIGFPGKPGPPGQTGLPGRDGPNGPPGLPGSKGEPGERGEGGLPG
RPGPRGEVGEQGLAGRPGEKGEAGLPGAPGFPGVRGQKGDQGEKGELGIPGLKGDRGEKG
EAGPAGPPGLPGTTSLFPPHPRMPGEQGPKGEKGDPGVPGEAGPQGRPGELGPRGPAGPP
GAKGQDGSQGAPGAAGSPGAPGPAGPPGVVGPPGSAGAPGTRGPPGRDGERGEKGTAGEE
GRPGPAGPRGDPGPPGKGQDGEPGLRGSPGLPGPPGTKGDRGAPGIPGSPGSRGDPGIGV
AGPPGPSGTPGDKGSPGSRGLPGFPGPQGPAGQDGAPGNPGERGPPGKPGPSSVLSPGDI
NLLVKDICNDCPPGPPGLPGLPGFKGDKGLPGKPGREGIEGKKGDTGPQGIPGPPGIPGP
QGSQGERGADGEIGQKGDQGHPGVPGFMGPPGNPGPPGADGMVGAAGPPGIPGPQGKEGP
PGPQGPSGIPGIPGEEGKQGRDGKPGPPGEPGKAGEPGLPGAEGARGPPGFKGHTGDSGP
PGPRGEPGAVGPPGQEGPPGKDGDTGPAGLQGPRGPRGPPGNNGSPGSPGDPGRPGTPGQ
KGTKGENGSPGLPGFLGPRGPPGEAGEKGVPGKEGAPGKPGEPGTKGERGDPGIKGDKGP
PGGKGQPGDPGSPGHKGHTGLMGPQGPPGESGPAGPPGPPGQPGFPGLRGESPSMETLRR
LIQEELGKQLETRLAYLLAQMPPAQVKASQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQG
GLEGPSGPVGPKGERGTKGDPGVPGVGLRGEMGPPGVPGQPGEPGYAKDGLPGSPGPQGE
TGPAGHPGPPGPPGPPGQCDPSQCAYFASLAARPGNVKGP
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcccccgagggagcgcggtggcctgcctcctgggggcgctcctgttgttgctg
tggggcggtgatggtggctgccaggcccagcgtgcaggctgcaagagcgtgcactacgac
ctggtcttcctgctggacacgtcctccagcgtgggcaaggaggacttcgagaaggtgcgg
cagtgggtggccaacctggtggacaccttcgaggtgggcgcggagcgcacgcgcgtcggg
gtggtgcgctacagcgaccggcccgccacggccttcgagctgggccgcttcggctcgcgc
gaggaggtcaaggccgccgcccggcgcctggccttcctcggcggccacacgcgcacgggc
gacgcgctgcgcttcgtcacggcccgcagcttctcggcgcgcgcgggcggccggcccggg
gaccccggcgtccagcaggtggccatcctgctgaccgacggccgcagccaggacctggtg
ctggaggccgcgcgggccgcgcacgccgccggcatccgcctcttcgctgtgggcgtgggc
gccgcgctgagggaggagctggacgagatcgcctcgcagcccaccgccgcccacgtcttc
cacgtgtccgacttcgacgccatcgacaggatccgcggcaagctgcgccgccgcctctgt
gaaaatgtgctgtgccccagcgtgcgggtagaaggagaccgatttaagcacaccagtggc
ggaacccaggaaatcacaggtttcgacctcatggacttgttcagtgtgaaggagatcctg
ggggagagagagaacggcgcgcagagttcctatgtccgcatggggtccttccccgtggtg
cagaggaccgaggatgtgtttccccaaggtcttcccgatgagtacgccttcgtcacgacg
ttccggttcaggaaaacgtctcggaaagaggactggtacatctggcaggtcatcgatcag
tacggcatcccacaggtctccatccggctagatggtgagaacaaggccgtggagtacaac
gcggtgggcgccttgaaggatgccgtcagggtggtcttccgaggtccccgcgtcaacgac
ctctttgaccgggactggcacaagatggccctgagcatccaggcccagaacgtctccctg
tacatcgactgtgcgctggtgcagacgctgcccatcgaggagagggagaacatagacatc
cagggcaagactgtgatcggcaaacgcctctacgacagtgtgcccattgattttgacctg
cagcggattgtgatttactgtgactcgagacacgcagaagtagagacctgctgcgacctc
ccgtcgggtccatgccaggtgacagtggtgactgagcctccgccggagcccccacagccg
cccacccccggcagtgaacagattgggttcttaaagaccgtcaactgctcctgcccagcc
ggagaaaagggcgaaaggggctttggtggccctgtggggctccccggtccaaagggagac
acaggagccgccgggctgatgggtgctcctggacccaagggagagaaaggggacatgggc
aggggaccctttatccaaggagagaagggagaaaagggttccctgggcccgcctggtccc
cccggaagagacggcagtaaaggcgtgagaggggagccgggagagctgggggagccgggg
ctgcccggagaagtgggcatgcgggggccccaaggaccacctgggcttccggggcctccc
gggcaccttggagctcccggcctccagggagaacgaggagaaaggggaacgcgaggagaa
aagggggaacgaggcttggatggattccccgggaagcccggggagacgggcgagcaggga
agacccggacctcccggtgtgccagggcctccaggggagaagggtgacgccgggccggca
ggcccccctggtgtgccgggctctgtgatgcagcaggagggcctgaagggagagcaggga
gctccaggaccaagaggtcaccagggccccccgggacccccaggagcaccgggtctgatt
ggtccagaaggcaaagaaggaacccctggtttgcaaggtctacgagggaagaaaggagat
gcgggcccgccgggaccccccggagcactggggctgcagggtccccccggaccccctggc
gtcccagggccccctggacccggaggccccccgggcttacctggagaaatcggcttcccc
ggcaagcctgggcctcctgggcagacggggttacccggaagagacgggccaaatggacca
ccaggcctgcccggatccaagggagagccaggagaaagaggcgaaggcggcctgccgggg
aggccgggcccccggggtgaagttggggagcagggcctggcaggccgacctggagagaag
ggagaagcaggtctcccgggtgctcccggcttcccaggtgtgcggggacagaaaggagac
cagggagaaaaaggtgaactgggaattcctggactgaaaggtgaccgaggtgaaaagggt
gaagccggcccagcaggccctcctgggttacctggaaccacatctctgttcccaccacac
cccagaatgccgggagagcaagggcccaaaggagagaagggcgaccccggtgtgccaggg
gaagcgggaccacaggggcgtcctggagaactggggcctcggggacccgccggacctccg
ggtgccaagggacaggacggctcccaaggggcccctggagcagccggaagccccggcgcc
cctgggcctgcaggaccccccggcgtcgtcggccccccgggaagtgcgggcgctcctggc
accagaggcccgccggggagagatggcgagcggggcgagaagggaacagcaggagaagaa
gggaggccagggccagcggggccccggggtgatcccgggcctcctgggaaagggcaggat
ggcgaaccggggctgcgaggctctcccggcttacccggccctccaggaaccaagggggac
cgaggagctcccgggatccctggctctcctggcagccgtggagacccgggcattggggtt
gctggacctcctggcccatctggaacaccaggagacaaaggctccccgggatctcgaggc
ttgcctggattccccggcccccagggaccagccgggcaggacggtgctccaggaaatccg
ggagaaagagggcctccgggaaaaccaggtccttcttcagtgctgtctccaggggacata
aatctcttggttaaggacatatgcaatgactgccctcctggccctccaggccttcccggc
ttgccgggctttaaaggggataaaggtctcccaggaaagcccgggagagaaggcatagaa
gggaaaaagggagacaccggaccccaaggcatcccagggcccccgggaatacctgggcca
cagggaagccaaggagagcgtggtgcagatggtgaaattggacagaaaggtgatcagggt
catcctggagttccgggcttcatgggacccccagggaaccccgggccccccggagcagat
ggaatggtgggagctgctgggcctccaggtattccagggccacaggggaaagaaggcccc
cctggaccccaaggcccttcagggatccccggaatcccaggagaagaaggcaagcagggc
agagacggaaagccaggtccccctggggagccgggcaaagccggggagccaggtctgccg
ggagcggagggtgcccgaggcccgcctggcttcaagggacacacaggcgattctggaccc
cctggtccccggggagagcctggcgctgtgggcccccctggccaggaagggccaccagga
aaagatggtgacaccggacctgctgggctacaggggccccgcggtcccaggggccccccg
ggtaacaacggatcaccaggttcccccggtgaccctggccgtccaggaacccccggccaa
aagggaaccaaaggagagaatggcagcccagggcttcctggcttcctgggtccccgaggg
ccgccgggagaagctggagagaaaggagttccaggcaaagagggggcccctgggaagccg
ggagagccggggaccaaaggagaaaggggagaccctggtatcaaaggagacaaaggaccg
cctggcgggaaggggcagcctggtgaccccggaagcccaggccacaaaggccacacagga
ctgatgggtccccaaggacctcccggggagagcgggccagccgggccaccgggacctcca
ggccagccagggtttcctggactgaggggtgagtctccgtcgatggaaacccttcgacgg
ctcattcaggaagagctcgggaagcagctggagaccagacttgcctacctcctggcccag
atgcccccggcgcaggtgaaggcctctcaaggcagacctgggcccccaggacctcctggg
aaagatgggcttcctggccgggcagggcccatgggggagccaggccggccgggccagggg
gggctggaaggaccctcaggaccagtaggtcccaaaggtgagcgaggaaccaaaggtgat
cccggtgtccccggagttggcctccgaggcgagatgggtccccccggagtcccaggtcaa
ccaggagaacctggctatgctaaggatggactcccagggagtcccggccctcaaggggag
acgggaccagctggacatcccgggcccccaggaccacccggaccccctggccagtgtgac
ccctcccagtgtgcctactttgccagtcttgctgcccggccgggtaatgtgaaggggccc
tag
DBGET
integrated database retrieval system
