Perognathus longimembris pacificus (Pacific pocket mouse): 125362358
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Entry
125362358 CDS
T08928
Symbol
Usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
plop01002
]
125362358 (Usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125362358 (Usp47)
Enzymes [BR:
plop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
125362358 (Usp47)
Peptidases and inhibitors [BR:
plop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
125362358 (Usp47)
Ubiquitin system [BR:
plop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
125362358 (Usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
ubiquitin
Dockerin_1
Motif
Other DBs
NCBI-GeneID:
125362358
NCBI-ProteinID:
XP_048217145
LinkDB
All DBs
Position
13:19188916..19277085
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AA seq
1375 aa
AA seq
DB search
MVPGEENQLVPKEDVFWRCRQNIFDEMKKKFLQIENAAEEPRVLCIIQDTTNSKTVNERI
TLNLPASTLVRKLFEDVANKVGYINGTFDLAWGNGINTADMVPLDHTSDKSLLDANFEPG
KKNYLHLTDKDGEQPQILLEDSSNVDDSVHDRFVGPLPREGSVGSSSDYVSQSYSYSSIL
NKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLF
VLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINEL
YQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPN
QYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSTF
IDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICLESNSATEKISKPGL
EKNSLIYELFSVMVHSGSAAGGHYYACIKSFNDDQWYSFNDQHVSRITQEDIKKTHGGSS
GSRGYYSSAFASSTNAYMLIYRLKDPTRNAKFLEVDEYPEHIKNLVQRERELEEQEKRQR
EIERNTCKIKLFCLHPVKQVMMENKLEVHKDKTLKEAVEIAYKMMDLEEVIPLDCCRLVK
YDEFHDYLERSYEGEEDTPMGLLLGGVKSTYMFDLLLETRKPDQVFQSYKPGEVMVKVHA
VDLKAETVDAPITVRAYLNQTVSEFKQLISKVVHLPIETMRIVLERCYNDLRLLGVPSKT
LKAEGFFRSNKVFVESSETLDYQVAFTDSHLWKLLDRHANTIRLFVLLPEQSPGSYSKRT
AYQKAGGDSGNVDDDCERVKGPVGSLKSVEAILEESTEKLKSLSLQQQQDGDNGDSSKST
ETSDFENIESPLNERDSSTSVDNRELEQHIQTSDPENFQSEERSDSDVNNDRSTSSVDSD
ILSSSHSSDTLCNADSAQIPLANGLDSHSITSSRRTKANEGKKETWDTAEEDSGTDSEYD
ESGKSRGEMQYMYFKADPYAADEGSGEGHKWLMVHVDKRITLAAFKQQLEPFVGVLSSHF
KVFRVYASNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNEQEPCKF
LLDAVFAKGMTVRQSKEELVPQLREQCGLELSIDRFRLRKKTWKNPGTVFLDYHIYEEDI
NISSNWEVFLEVLDGVEKMKSMSQLALLSRRWRPSEMKLDPFQEVVLESSSVDELREKLT
EISGIPLEDLEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYICDDGAVIFYRDK
TEEIMELTEEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAPNKDLTQD
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccggcgaggagaaccagctcgtcccgaaagaggatgtgttttggagatgcaga
caaaatatctttgatgaaatgaagaagaaatttttacagatagaaaatgctgccgaagaa
cctagagtcttatgtataatacaagatactacgaactcaaaaacagtgaatgaacggatc
actttaaatttaccagcatctactctagtcagaaaactctttgaagatgtggccaacaaa
gtaggctacataaatggaacctttgatttggcatggggaaatggaatcaacactgctgat
atggtaccactggatcataccagtgacaagtctcttcttgatgctaattttgagccagga
aagaagaactatctgcatttgacagataaagatggtgaacaaccccaaatactgctggag
gactccagtaatgtggatgacagtgttcatgacaggtttgtaggtccactcccaagagaa
ggttctgtgggctccagcagtgattatgtcagccaaagctactcctattcatcaattttg
aacaaatcagaaactggatatgtgggattagtaaaccaggcaatgacttgctatttgaat
agccttttgcaaacgctttttatgactcctgaatttaggaatgcattatataaatgggaa
ttcgaagaatctgaagaagatccagtgactagtattccataccaactccaaagacttttt
gttttattacaaaccagcaaaaagagagcaattgaaaccacggatgttacaaggagcttt
ggatgggatagtagtgaggcttggcaacagcatgatgtacaagaactgtgccgagtcatg
tttgatgctttggaacagaaatggaaacaaacagagcaggctgatctcataaatgaactg
tatcaaggcaaactaaaggactatgtgagatgtctggaatgtggatatgagggctggaga
atcgacacctatcttgacatcccattggtcatccgaccttatggctctagtcaagcattt
gctagtgtggaagaagcattacatgcatttattcagccagagattctagatggcccaaat
cagtatttttgtgaacggtgtaagaagaagtgtgatgctcgaaagggccttcggtttttg
cattttccttatttactgactttacagttgaaacggtttgattttgattatacaaccatg
cacaggattaaattgaatgatcgaatgacatttcctgaggagctagatatgagtacattt
attgatgttgaagatgagaaatctcctcagactgaaagttgcacggatagtggagctgaa
aatgaaggtagttgtcacagtgatcagatgagcaatgatttttccaatgatgatggtgta
gatgaaggaatctgccttgagagcaatagtgcaacagaaaagatttctaaacctggactt
gaaaagaattccttgatctatgagctcttctctgttatggttcattcggggagtgctgct
ggtggtcattattatgcctgtataaagtcatttaatgatgatcaatggtacagcttcaat
gatcaacatgtcagcaggataacacaagaggacattaagaagacacatggtggatcatca
ggaagcagaggatattattccagtgcttttgcaagctctacaaatgcatatatgctgata
tatagactgaaggatccaacacgaaatgcaaaatttctagaagtggatgaatatccagaa
catataaaaaacttggtgcagagagaaagagaattggaagaacaagaaaagaggcaacgg
gaaattgagcgtaatacatgcaagataaaattattctgtttgcatcctgtgaagcaagta
atgatggaaaataaattggaggttcacaaggataaaacattaaaggaagcagtagaaata
gcttataagatgatggatttagaagaagtaatacctttggattgttgtcgccttgttaag
tatgatgagttccatgattatctggaacgatcatatgaaggagaagaagataccccaatg
ggacttctcctaggtggagtcaagtcaacatacatgtttgatcttctgttagagacaaga
aagcctgatcaagtttttcagtcttacaaacctggagaagtgatggtgaaagttcatgct
gttgatctgaaggcagagactgtagatgctcctataactgtccgggcttatttaaatcaa
acagtttctgagttcaaacaactgatttcaaaggttgttcatttacctattgaaacaatg
agaatagtgctggaacgttgctataatgatttacgtcttctcggtgtacccagtaaaacc
ttgaaagctgaaggtttctttagaagtaacaaggtgtttgttgaaagttctgagaccttg
gattaccaagtggcctttacagattctcatttatggaaactcttggatcgacatgcaaat
acaatcaggttatttgttttgctacctgagcagtccccaggatcgtactctaaaaggaca
gcataccagaaagctggaggggattctggaaatgtggatgatgactgtgaaagagtgaaa
ggacctgtaggaagcttaaagtctgtggaagctattctagaagaaagcactgaaaagctc
aaaagcttgtctctgcagcagcaacaggatggagacaatggggacagcagcaaaagcact
gagacaagtgactttgagaacattgaatcacctctcaatgagagggactcttcaacgtct
gtggataacagagaactggagcagcacattcagacttctgacccagaaaattttcagtct
gaagaacgatcagactcagatgtgaataatgacaggagtacaagttcagtggacagtgat
atccttagttccagccatagcagtgatactttgtgcaatgcagatagcgctcagatccct
ttggctaatggtcttgattctcacagtatcacaagtagtagaagaactaaagcaaatgaa
ggaaaaaaggagacatgggatacagcagaagaagactctggtactgatagtgaatatgat
gagagtggcaagagtaggggagaaatgcagtacatgtatttcaaagcagatccttatgct
gcagacgaaggttctggggaaggacacaaatggttgatggtgcatgttgataaaagaatt
actctggcagctttcaagcaacagttagagccctttgttggagttttatcctctcacttc
aaggtctttcgagtgtatgccagcaaccaagagtttgagagcgtccgactgaatgaaaca
ctttcatcattttcagatgacaataagatcacaattagactggggagagcacttaaaaaa
ggagaatacagagttaaagtgtaccagcttctagttaatgaacaagagccatgcaagttt
ctgctagatgctgtttttgctaaaggaatgactgtacggcaatcaaaagaggaattagtt
cctcaactcagggagcaatgtggcttagagctcagtattgacaggtttcgtctaagaaaa
aaaacatggaagaatcctggcactgtctttttggattatcatatttatgaagaagatatt
aatatttccagcaactgggaagttttccttgaagttcttgatggggtagagaagatgaag
tccatgtcacagcttgcccttttatcacgacggtggaggccttcagagatgaagttggat
cccttccaggaggttgtgttggagagcagtagtgttgatgaattaagagagaagctgact
gaaatcagtggaattcctttggaagatctagaatttgccaagggtagaggaacttttcct
tgtgatatttctgtcctagatattcatcaggatttggattggaatcctaaagtttctacc
ctgaatgtctggcctctttatatctgtgatgacggtgcagtcatattttacagagataaa
acagaagaaataatggagttgacagaggagcaacgaaatgaactgatgaagaaagaaagc
agtcgactccagaagactggacatcgtgtgacatactcacctcggaaagagaaagcacta
aaaatatatctggatggagcgccaaataaagacttgactcaagactga
DBGET
integrated database retrieval system
