Pleurocapsa sp. PCC 7327: Ple7327_3951
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Entry
Ple7327_3951 CDS
T02367
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plp
Pleurocapsa sp. PCC 7327
Pathway
plp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ple7327_3951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plp03400
]
Ple7327_3951
Enzymes [BR:
plp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ple7327_3951
DNA repair and recombination proteins [BR:
plp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ple7327_3951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFY79097
UniProt:
K9T876
LinkDB
All DBs
Position
4206888..4210421
Genome browser
AA seq
1177 aa
AA seq
DB search
MTLESVVRALARSPLTQELLQKLNQQRSLLLSGMPRLPKGLVASSLAQSQDKNLLVVCAT
LEEAGRWATQLEAMGWKTVHFYPTSEASPYEPFNPESEMIWGQMQVLSSVVISHLSLVGE
KEQRTKDEGQKTNIAIVATERALQPHLPWPEIFQYYCLEFELGMAQEAKTLDSHLARLGY
ERVPLVETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEQIREFDPATQRSLDKIDRLV
LTPTSFAPIIAAAIKNIEDSLSIYLSAQEKEAFSTGNLPEGMQRFLGIAFEKPASLLEYL
PKNTLCVFDEIEQCRAHSDRWVEYVEDRWLELDKPLPKIHRSFEESFQLAEQFPIVYLSE
LAEEIYHHSIYTVNLSSRPIPTTPHQYAKLAEILRGKREIYSGITLSKYASWIISAQPSR
TVSLLQEHDCPAQFIPNPRDYPAIEKLNAQNTAVALKYSGLAELEGFILPTYRIVVVTDR
ELFGQHALVSLGYVRKRRRAASKQVDLNKLRPGDYVVHKSHGIGKFVKLETLSDREYLAI
QYADGLLRVPADSFDSLSRYRQAGNRPPELHKMSGKAWEATKNRVRKSVRKLAVDLLNLY
AKRSQLSGHAYPADTPWQAELEDSFPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGF
GKTEVAIRAIFKAVTSAHKQVAFLAPTTILTQQHYHTLKERFAPYPINVGLLNRFRTASE
KKEILQRLATGELDIVVGTHQLLGKEVKFRDLGMLVIDEEQRFGVNQKEKIKAMKTQVDV
LTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNLEVVRTAIRNELDRGGQ
VFYVVPRVEGIEETAGQLGQTIPSARIVVAHGQMDSSELEATMLAFNNGEADILVCTTII
ESGLDIPRVNTIIVEDAQLFGLSQLYQLRGRVGRSGVQAHAWLLYPSKGTLTDTARQRLR
ALQEFTQLGSGYQLATRDMEIRGVGNLLGVEQSGQMEAIGFELYMEMLQEAIEEIQGQEI
PQVDDAQIDLKLTAFIPTDYIPDLEQKMDAYRAVALANSKRELQQIAADWNDRYGKLPTP
VEQLLKVVELKQIAKSLGFSRVKPDGSQHVILETPMEEPAWKLLQEKLPEHLRSRFVYSP
KKVTVRGLGVLNPQQQLENLIDWLGKMLDALPEAKVV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgacattagagtccgtcgtccgtgctttagcgcgatcgcccctcactcaagaattgctc
caaaagctgaaccagcagcgatcgctgctgttgtctggcatgcctcgcttaccgaaggga
ttagttgcttcgagtttggcgcaatctcaagacaaaaatctattagtcgtctgcgccacg
cttgaagaagcagggcgctgggcgacacaattagaggcgatggggtggaagaccgtacat
ttctatcctacctcggaagcatcgccctacgagccatttaaccccgaatcagagatgatt
tggggacagatgcaggtgttgtcctctgtcgttattagtcatttgtcattggtaggagaa
aaagaacaaaggacaaaggacgaaggacaaaaaactaatattgctatcgttgcaacggag
agggcgctacaacctcatttaccatggccagagatttttcaatattattgtttggagttc
gagctaggaatggcgcaggaggcaaaaaccctagactcgcacttggcaagattgggttac
gaacgagtccctctggtagaaactgaggggcaatggagtcgccgaggggatatcgtcgat
attttccccgtttcggcagaattgcccgtgcgcctggaatggtttggcgacgaactagaa
caaattcgagagttcgatccggcaacgcagcgttcccttgataaaatcgatcgcttggtt
ctcaccccgacaagttttgcaccgattattgctgctgcaattaaaaatatagaagattcg
ctatcgatatatctttctgctcaagagaaagaagcttttagtacgggaaatttaccggaa
ggaatgcaacgatttttgggaattgcctttgaaaaacccgcttctttattagagtattta
cccaagaatactctatgcgtatttgatgaaatcgaacaatgtcgcgcccatagcgatcgc
tgggttgagtatgtcgaagatcgatggttagagttagacaaacctttaccaaaaattcat
cgttcttttgaggaatcttttcaattagccgaacaatttccaattgtttatttatccgaa
cttgccgaagaaatctatcatcattcaatttatacagttaatctttccagccgtcccatt
ccaacaactccccatcaatatgcaaaactagctgaaattttgcgaggaaagcgagaaatt
tatagtggcattaccctcagtaaatatgctagctggattatttccgctcaaccttctcgg
acggtgtcgctattacaagaacacgactgtcccgcacaatttatccccaatccacgcgac
tatccagccatagaaaaactcaacgcgcaaaatacagcagttgccttaaaatattctggc
ttagcagaattagaagggtttattttaccgacttatcgtatcgtcgtcgttaccgataga
gaattattcggacaacacgcattagtaagccttggctacgtacgaaaacgtcgccgtgct
gcctctaaacaagtcgatctcaataaattgcgtccgggagattacgtcgttcataaaagt
catggaatcgggaaatttgtcaagctagagacgttatccgatcgcgaatatttagccatt
caatatgccgatggattgttgagagttccggcagattcttttgatagtttatctcgctat
cgccaggcgggaaatcgtcctcccgaattacataaaatgtcggggaaagcttgggaagcg
accaaaaatagagttcgtaaatcggtcagaaaattagccgtcgatttattgaatttatat
gccaagcgatcgcaactttccggtcatgcttatcccgccgatacgccttggcaagcagaa
ttagaagattcttttccctatcaacccacgccggatcaactcaaggcaattcaagatgtc
aagatagatttagaaagcgatcgcccgatggatcgtctcgtctgtggcgatgtcggtttt
ggcaaaaccgaagtggcaattcgcgccatctttaaagccgtcactagcgcacacaaacaa
gtcgcttttctcgcgccaacgacgattctaactcagcaacactatcacacgctaaaagaa
cgatttgctccctatcctattaacgttggcttgctcaatcgcttccgaactgcatcggag
aaaaaagagattttacagcgcctcgcaacaggagaattagatattgtcgtcggcacgcat
cagctattaggaaaagaggttaaatttagagatttgggaatgttagtcatcgacgaagaa
cagcgatttggagtcaatcaaaaagaaaaaattaaagcgatgaaaacgcaagtcgatgta
ctaactttgacagcgactccgattcctcgaaccctttatatgtctttgtcgggaattcgg
gaaatgagtttaattaccactcccccgccttcccgtcgtcccatcaaaacccatttatcg
ccctacaatttagaagtcgtcagaacagccattcgcaacgaactcgatcgcggcggacaa
gtattctatgtcgttcccagagtcgaaggcattgaagaaactgctggacaattgggacaa
acaatccccagtgcgagaattgtcgttgcccacggacaaatggacagctccgaactcgaa
gcaaccatgcttgcctttaataacggagaagccgacattctggtgtgtacgacgattatt
gaatcgggattggacattcccagagtcaacaccattatcgtcgaagatgcccagctattt
ggattatcccaactatatcagttacgcggacgagtcgggcgatcgggagtgcaagcacac
gcttggttattatatcccagcaaagggacactaacagataccgcacgccagcgcttgcgt
gccttgcaggaatttacccaactcggttctggctatcaattagctacccgcgacatggaa
attcgcggcgtgggcaatctgctaggggtagaacagtcagggcaaatggaggcgattggg
tttgagttatatatggagatgttgcaggaggcgatcgaggagattcagggacaagaaatc
ccgcaagtggacgatgcgcaaatcgatctgaagctgactgcttttattccgaccgattat
attcccgatctcgaacagaaaatggatgcgtatcgggcagttgcgctggcgaattccaag
cgagaattgcaacaaatcgccgcagattggaacgatcgctatggcaagctgcctacaccc
gtagaacagttgttgaaagtggtcgaactcaaacaaattgccaagtcgctgggcttttct
cgcgtcaaaccggatggcagccagcacgtcattttagaaacccccatggaagaacctgcc
tggaagttattgcaagaaaagcttcccgaacacttgcgatcgcgtttcgtttacagtccg
aaaaaggtgacggtgagaggattgggcgtattgaacccccagcagcagttggagaattta
attgattggttgggtaagatgctcgatgctttacctgaggctaaggttgtttga
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