Planctomyces sp. SH-PL14: VT03_02110
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Entry
VT03_02110 CDS
T04354
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT03_02110 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pls03019
]
VT03_02110 (deaD)
03009 Ribosome biogenesis [BR:
pls03009
]
VT03_02110 (deaD)
Enzymes [BR:
pls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VT03_02110 (deaD)
Messenger RNA biogenesis [BR:
pls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VT03_02110 (deaD)
Ribosome biogenesis [BR:
pls03009
]
Prokaryotic type
rRNA helicases
VT03_02110 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMV16653
UniProt:
A0A142WPE7
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All DBs
Position
488968..490818
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AA seq
616 aa
AA seq
DB search
MSEVTLPKSEVAFADLGLNPLLLRAVEAYPFATPIQAEAIPPILEGRDIVGQAQTGTGKT
AAFAIPMLQRIDLNRATPQVLVLAPTRELAIQVAESFEKYGAHLPGLRVTSIYGGQDYQV
QFRQLDRGVHVVVGTPGRVMDHLRRGSLRLDGMHAFVLDEADEMLKMGFAEDVEWILTQA
PQERQIALFSATMPPAIRRIAEQHLRSPAEITIRQVSATADTVRQRFIVAPPRVKFDVLA
RVLEAEETDGVIIFVRTRSTTEPLADFLNGIGYRTGALSSDVAQKQREKIVDALRSGKLD
IVIATDVAARGLDVQRISHVINYDLPRDSESYVHRIGRTGRAGRTGNAILFLHPKERPLL
RRLENATRREIEPMEVPTKREINRRRVSKFHERITAALAHPELGTIQSLIEQYRREHPET
TVEQIAAALGAISTGEGPLLLTEELPPIGGFAERRDARFDDQGPRRFERGDRGDRMERGG
ERFGDRRNDERFARERPPRRNDEMETFRVEVGRQHDVKPGNLVGAIANETGLQSSLIGRI
EIFDDFSTVDLLAGMPDDIFDSLKRVWVAGRQLNISRVGSEQRRPRREFSPEGAGPRGRA
RRPARRDGFAPEAASR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagtgactctgccgaagtccgaggtcgcgtttgcggacctgggcctcaacccg
ctcctgctccgcgctgtcgaagcgtatccctttgccacgccgatccaggccgaagcgatc
ccgccgatcctggaaggccgggacatcgtcggccaggctcagaccggcaccgggaagaca
gcggcctttgccatcccgatgctccagcggatcgacctcaaccgggcgacgccgcaggtc
cttgttctggcgccgacccgcgagctggcaatccaagtcgcggaatcgtttgaaaagtac
ggggctcacctccccggcctccgcgtgacgtcgatctacggcggccaggactatcaggtc
cagttccgccagctcgaccgcggcgtccacgtcgtcgtcggaacgccgggccgcgtcatg
gaccacctccgccgtggttcgctccggctcgacggcatgcacgccttcgtcctcgacgag
gcggacgagatgctcaagatgggcttcgccgaagacgtcgagtggatcctcacgcaggct
ccgcaggagcggcagatcgcgctgttctcggccacgatgccccccgcgatccgccggatt
gccgagcagcacctccgctctcctgccgagatcacgatccggcaggtctccgccacggcc
gatacggtccgccagcggttcatcgtcgccccgccgcgagtcaagttcgacgtcctggcc
cgggtcctcgaagcggaagagaccgacggcgtcatcatcttcgtccggacgcggagcacg
acggagccgctggccgacttcctgaatgggatcggctaccggaccggcgcgctgagcagc
gatgtggcccagaagcagcgcgagaaaatcgtcgacgcgctccgctcggggaagctcgac
atcgtgatcgcgaccgacgtcgccgcccgcggtctcgacgtgcagcggatcagccacgtc
atcaactacgacctcccccgcgacagcgagagctacgttcaccgcatcggccggacgggc
cgcgccggccggaccgggaacgcgatcctgttcctgcatccgaaggagcgacccctgctg
cggcggctggagaacgccacgcggcgtgagatcgagccgatggaggtcccgacgaagcgg
gagatcaaccgccgccgcgtttcgaagttccatgagcggattaccgccgcgctggctcat
cccgaactcgggacgatccagtcgctgatcgagcagtaccgccgcgagcatcccgagacg
accgttgagcagatcgcggccgctctcggagcgatttcgaccggggaagggccgctgctt
ctgaccgaggagttgccgccgatcggcgggttcgccgaacgccgggatgcccggttcgat
gaccagggtccgcgccgctttgagcggggcgaccgtggggatcggatggaacgcggaggc
gagcggtttggcgatcgccgcaatgacgagcggtttgcccgcgagcgtccgccgcgtcgg
aacgatgagatggagacgttccgcgtggaagtcggccggcagcacgatgtgaagccgggc
aacctggtgggtgcgattgctaacgagaccgggctgcagagctcgctgatcggccggatt
gagatcttcgatgatttcagcaccgtcgacctgctggcggggatgccggacgatattttc
gactcgttgaagcgggtgtgggtggccggacggcagctcaacatttcccgtgtcggttcg
gagcagcggcgtccgcggcgggagttttcgcccgaaggtgccggcccgcgtggtcgggcc
cggcgtcctgcccgtcgagatggtttcgcgcccgaggctgcttcgcggtaa
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