Pelodictyon luteolum: Plut_0587
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Entry
Plut_0587 CDS
T00291
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plt
Pelodictyon luteolum
Pathway
plt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plut_0587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plt03019
]
Plut_0587
03009 Ribosome biogenesis [BR:
plt03009
]
Plut_0587
Enzymes [BR:
plt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Plut_0587
Messenger RNA biogenesis [BR:
plt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Plut_0587
Ribosome biogenesis [BR:
plt03009
]
Prokaryotic type
rRNA helicases
Plut_0587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
MRP-L47
DUF6702
Motif
Other DBs
NCBI-ProteinID:
ABB23470
UniProt:
Q3B5B1
LinkDB
All DBs
Position
686304..688076
Genome browser
AA seq
590 aa
AA seq
DB search
MSAETPEPIRNFTDLNLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGK
TAAFALPILSGIDLSLTDPQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLPIYGGQDYG
GQLRMLKRGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGE
TPKERQVALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGGSHKLDIL
TRILEVEPFEGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSL
NIVIATDVAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNM
LYAIEKATRKRIELMELPSTEIINDKRIEKFKQRISDTIAAEDLGFFTRLIEQYCHEHDV
SELEAAAALAAMVQGDTPLLFSAKPEKQVRREERDRPSDEAPFRKKPRRDDMYGDEKREV
YRIEVGSEHGVQAGNILGAIINEIGLDPEAIGRISISDAFSTVELPAGMPNDIFQELRKV
RVCGRQLRVSKMEGGQGGGSPYGGKGAKRPARPSGKDGGFFTGPKKKRKG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagaaacaccagaacccatcaggaattttaccgacctcaacctaagcgagccc
attatgcgggcactgaaggaagtcggctacgaaactcctacaccgatacaggcccgtacc
ataccgctgatgcttgaaggacgcgatgtccttggacaggcacagaccggtaccggcaaa
acagcggcattcgcccttcccattctttcgggcatcgacctttccttaacggatcctcag
gtactggtgctcgcaccgacccgtgaactggccatccaggttgccgaggcgttccacaag
tatgccgaatacctcaaggggttccacgtactgcccatctacggcgggcaggattacggc
gggcagctccgcatgctcaagcgcggcgtgcatgtcgtcgtcggtacccccggccgcgtc
atggatcacatgcgcagaggctcactgaaccttgattccctgcagtgcctcgtgcttgac
gaggccgatgagatgctccggatgggcttcatcgatgatgtggagtggattctcggcgag
actccaaaagagcgtcaggtcgcactcttctcggcaacgatgccggcaccgatccgccgc
atcgcacagaaatatctgaacagccccgctgaagtgaccatcgagggcaagacgaccacc
gttgaaaccatccgccagcgttattggatcgtcggcggcagccacaagctcgacattctg
acccgcattctcgaagtggagccgttcgagggcatgctcattttcgtacggacgaagacg
atgaccctggaacttgccgaaaaacttcaggcccgcggctatgccgcagccgccctcaac
ggcgatatggtgcagaaccagcgcgagcggaccgtcgaccagctgaaagacggctcactg
aatatcgtcatcgccactgacgtggcagccagaggtcttgacgttgagcgtatcagccat
gtcatcaattatgatgttccttacgacaccgagtcctacgtgcaccgcatcggccggacc
ggccgtgccggcaggagcggcgaggccatcctctttgtcgccccgagggagaagaacatg
ctctacgccattgaaaaggcgacccgcaagcgtatcgagctgatggagcttccctcgacg
gagatcatcaacgacaagcgtatcgaaaagttcaagcagcgcatcagcgacaccatcgcc
gctgaagaccttgggttcttcacccgcctcatcgagcagtactgccatgagcatgatgtg
tcggaactcgaggcagccgccgcactggccgccatggtacagggagacactccgctcctc
ttttctgcgaagcctgaaaagcaggtgcgccgtgaagagcgggaccgtccttctgacgag
gctccgttccgcaaaaagccacgccgcgatgatatgtacggtgacgaaaagcgggaggta
taccgtatcgaggtcggcagcgagcacggcgtacaggccggaaacattctcggcgccatc
atcaacgagatcgggcttgaccccgaagcgatcgggcgcatctccatttccgatgcgttc
tcgacggtggagctgccggccggcatgcccaacgatatcttccaggaacttcgcaaggtt
cgtgtctgcggacgccagctcagggtgtcgaaaatggagggcggccagggcggcggttct
ccttacggcggcaaaggggcgaaacggccggcacggccatccggaaaggacggcggcttc
ttcaccggaccgaaaaagaagcgcaagggctga
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integrated database retrieval system
