Photorhabdus laumondii subsp. laumondii TTO1: plu0440
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Entry
plu0440 CDS
T00149
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Pathway
plu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
plu0440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plu03021
]
plu0440 (rpoC)
03400 DNA repair and recombination proteins [BR:
plu03400
]
plu0440 (rpoC)
Enzymes [BR:
plu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
plu0440 (rpoC)
Transcription machinery [BR:
plu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
plu0440 (rpoC)
DNA repair and recombination proteins [BR:
plu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
plu0440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAE12735
Pasteur:
plu0440
UniProt:
Q7N9A3
LinkDB
All DBs
Position
468599..472819
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEVKDGEGNITTNTGLVDTTIGRAILWMIVPRGLPYSLVNQPLGKKA
ISRMLNTCYRVMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVTNRDGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEESSVDSIKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGSLKL
FNAKSVTNSAGKLVITSRNTELCLIDEFGRTKESYKVPYGAVLGKGDGETVNGGETVANW
DPHTMPVVSEVSGIIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLDDGVSISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEVSGIVSFGKETKGKRRLVISPLDGGDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSEFLEGEQVEYARVKVANRKLEQEGKVAATYGRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRIRRRQLNEPAE
APQVSVDEATANLAELLNAGFGGDKK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagatatgatccgttcgtggtcatttggtgaagtgaaaaag
ccggaaacaattaactaccgtacgttcaaacctgagcgtgacggtcttttctgtgcccgt
attttcgggccagtaaaggattatgagtgcttgtgtggtaaatacaagcgcttgaaacac
cgtggtgtaatttgtgagaagtgtggtgtagaagttacccaaactaaagttcgtcgtgag
cgtatgggtcacattgagctggcttctccaactgcacacatctggttcctgaaatcattg
ccatctcgcatcggtttgttgctggatatgccactgcgtgatattgagcgtgtactgtac
ttcgaatcctatgtggttgtcgaaggcggtatgaccagcttggaacgcagtcagattctg
acggaagagcaatacttggatgcactggaagagtttggtgatgaattcgatgcgaagatg
ggcgcggaagctatccagtctttgctgaaaaatctcgatctggaaaatgagtgtgaaacg
ctgcgtgaagagttaaacgaaactaactctgaaacgaaacgtaaaaagctgaccaaacgt
attaaactgttggaagcctttattcagtctggtaacaaaccagaatggatggttctgacg
gttctgccagttctgccaccggacttacgtccattggttccactggatggcggccgtttt
gccacttcggatctgaacgatctctatcgtcgtgttattaaccgtaacaaccgtttgaag
cgcctgttagatctggctgcgccggatatcatcgttcgtaacgaaaaacgtatgttgcag
gaagcggtcgatgctttgctggataacggtcgtcgcggtcgtgcaattaccggttctaac
aaacgtccactgaaatccctggctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacttgttgggtaaacgtgttgactattctggtcgttctgtaatcactgtaggtccttac
ctgcgtttgcatcagtgtggtctgcctaaaaagatggcactggagctgtttaagccattc
atctacggcaagctagaactgcgtggtttagcgacgacgattaaagccgctaaaaagatg
gttgagcgtgaagaggcggtggtatgggatatcctggatgaagtcattcgtgaacatccg
gttctgctgaaccgtgcgccgacacttcaccgtttgggtattcaggcattcgaaccggtt
ctgattgaaggtaaagcgattcagttgcacccactggtgtgtgcggcatataacgccgac
ttcgacggtgaccaaatggctgttcacgtaccgttgacactggaagcccagttagaagcg
cgtgcattgatgatgtctaccaacaacatcctgtctccagcgagtggtgagccaatcatc
gttccatctcaggacgttgttctgggtctgtattacatgacccgcgactgtgttaacgcg
aaaggcgaaggcatggtattgaccgggcctaaagaagcagaacgcgtatatcgcgcagga
ctggcttctctgcatgcccgcgttaaagtgcgtatcactgaagaagtgaaagatggcgaa
ggcaatatcacaactaacaccggtttggttgatacgactattggtcgtgccattctgtgg
atgattgtaccaagaggtctgccttactcgttggttaaccaaccactgggtaaaaaagcc
atctctaggatgctgaacacctgttaccgtgtgatgggcttgaagccaacggttattttc
gctgaccagatcatgtataccggctttgcctacgctgcacgttcaggtgcatctgttggt
atcgatgacatggttatcccagagaaaaaggccgggatcattgccgaagcagaagcagaa
gttgctgaaattcaggaacagttccaatctggtctggttacagccggtgaacgttataac
aaggttatcgatatctgggctgcggcaaacgagcgtgttgctaaggcaatgatggaaaac
ttgtcgactgaaacagtcactaatcgtgatggtgaagaagagcaacaagtttccttcaac
agcatctttatgatggctgactccggtgcgcgtggttctgccgctcagatccgtcagttg
gcgggtatgcgtggcttgatggctaagccagacggctccatcatcgaaaccccaattacg
gcgaacttccgtgaaggtttgaacgtactccagtacttcatctcaactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacagcgaactccggttacctgactcgtcgtctg
gttgacgtggcgcaagacttggttgtgacagaagatgactgtggtacgcacgacggtatt
ctgatgacgccggttattgaaggtggtgatgttaaagagccactgcgtgagcgtgtattg
ggtcgtgtgacggcggaagatgttctgaaaccaggtactgctgatattctggtgccgcgt
aatacattgctgaacgagaaatggtgtgatctgttagaagagagctccgttgacagcatt
aaagtacgttctgttgtaagttgcgaaactgacttcggtgtttgtgcaaactgctatggt
cgtgaccttgctcgcggacacatcatcaataaaggtgaggcggttggtgttattgcggct
cagtccatcggtgagccgggtacacagttgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcagcagcagaatccagtattcaggtacgtaacaaaggtagcttgaagcta
tttaacgctaagtccgtgacgaactccgcaggcaagctggtgattacttctcgtaacact
gaattgtgtctgatcgacgaatttggccgtactaaagaaagctataaagtgccttacggt
gcagtactgggtaaaggtgatggcgaaaccgttaacggcggtgaaaccgttgctaactgg
gatccgcacaccatgccagtggtcagtgaagtatctggtatcatccgtttcgctgacatg
atagatggccagaccattacccgccagactgacgaattgacaggtctatcttcattggtt
gttctcgatagtgcagaacgtaccggtagtggtaaagatctgcgtccggcactgaaaatc
gttgatgccaaaggtgacgatgtattgattccaggtactgatatgcctgctcaatatttc
ctgccgggtaaagcgattgttcagttagacgatggcgtaagcatctctgcgggtgatact
ttagcgcgtattcctcaggagtccggcggtacgaaagatattaccggtggtttgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgctatcctggctgaagtcagc
ggtattgtctcctttggtaaagagaccaagggcaaacgccgtttggttatctccccatta
gatggtggcgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtgttcgag
ggtgaagtggttgaacgtggtgacgtgatctctgatggtccagagtctccacacgacatc
ttgcgcctgcgtggtgttcatgcggttacccgttacatcaccaacgaagttcaggaagtt
taccgcctgcaaggggttaagattaacgataaacacattgaggttatcgttcgtcagatg
ctgcgtaaagcgaccattgaaagtgcaggtagctccgagttcttggaaggcgaacaggtt
gaatatgcccgcgttaaagtggcaaaccgtaagctggaacaagaaggtaaagtggctgca
acttatggccgtgacctgttgggtatcaccaaagcgtctctggcgactgaatccttcatc
tctgcggcatcgttccaggaaacgacccgcgtactgactgaggctgcggttgcgggtaaa
cgtgatgaactgcgtggcttgaaagaaaacgtcatcgttggtcgtctgatccctgctggt
accggttatgcttaccatcaggatcgcatacgtcgtcgccagttgaatgagcctgccgag
gcaccacaagtgagtgtcgatgaggctactgcgaacttggcagaactgttgaatgccggt
tttggtggtgataagaagtaa
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integrated database retrieval system
