Photorhabdus laumondii subsp. laumondii TTO1: plu1398
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Entry
plu1398 CDS
T00149
Symbol
ligA
Name
(GenBank) DNA ligase (polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Pathway
plu03030
DNA replication
plu03410
Base excision repair
plu03420
Nucleotide excision repair
plu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
plu1398 (ligA)
03410 Base excision repair
plu1398 (ligA)
03420 Nucleotide excision repair
plu1398 (ligA)
03430 Mismatch repair
plu1398 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plu03032
]
plu1398 (ligA)
03400 DNA repair and recombination proteins [BR:
plu03400
]
plu1398 (ligA)
Enzymes [BR:
plu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
plu1398 (ligA)
DNA replication proteins [BR:
plu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
plu1398 (ligA)
DNA repair and recombination proteins [BR:
plu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
plu1398 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
plu1398 (ligA)
MMR (mismatch excision repair)
DNA ligase
plu1398 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
plu1398 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RUBY_RBDX
BRCT_2
DUF3248
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAE13691
Pasteur:
plu1398
UniProt:
Q7MBH2
LinkDB
All DBs
Position
1677687..1679705
Genome browser
AA seq
672 aa
AA seq
DB search
MKSTAQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPTQ
RIGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQDLVVCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVFMPQKG
FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGELPASHY
ERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLELQEIL
GFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSNATLHN
ADEIERLGLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVFPEHCPVCGADIERIEG
EAVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQLVDKEYVKTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKKTTFARFLYALGIREVGEATAANLAAHFGELDKLRS
ADEEALKEVQDVGEVVAKHVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFS
GKTVVLTGSLHQLSRDEAKAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPV
IDEEEMIRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaactgctcaacaaatagaaaagctcagaacaacactgcgtcatcatgaatat
ctgtatcacgtcatggatgcaccagaaatccctgatgcagaatatgatcggttaatgcag
gaattgcaggatcttgaagaacaataccctgagttgattacatcggattcaccaacgcag
cggattggcgctgctcctctggcggcttttgaacaggtccgccatgaaattcctatgttg
tcattggataacgtatttgatgaagagagttatctggcgtttgataagcgggtgcgtgac
cgcctgaaagagacccaggatttagtggtgtgctgtgagctgaaactggatggtttggcg
gtcagcctgttgtatgaaaatggtgaattggtacgggctgcaactcgtggtgatggtaca
acaggggaaaatattacatcaaatatacggactatcggcgcaattccactgcgtctattc
ggcgaaaatattccagctcgtattgaaattcgcggtgaagttttcatgccgcaaaaaggg
tttgagaaactgaatgaggaagctcgccgcacgggtgcaaaagtatttgctaacccacgt
aatgcggcggctggctctttacgtcagctcgatccccgtattacggctaaacgtccattg
gctttcttctgttatggtgttggtatattggaggggggagagttacccgccagtcattac
gaacgattgatacagtttaagaaatggggattgccggtcagcgataaagttaaagtttgt
accgatagtcaacaggttattgatttttatcatgatattgtaaaccagcgttccgcattg
gggtttgatatcgatggtgttgttgtcaaaatcaattcgctggaattgcaggaaatattg
ggctttgttgcccgggcgccacgttgggccacagcattcaaatttcctgctcaggagcaa
atgacgattgttcgtgatgttgagtttcaggttggtcgtactggtgcaatcacaccggta
gcacgtctggagccagtacaggtctctggtgtcattgtcagtaatgcaacattgcacaat
gcggatgagattgaacgtttaggtttgcggattggcgatacggttattatccgccgtgcc
ggtgatgtgattccacaagttgtcggtgttttggaagagagaaggccacaggacagtaat
gtagttgttttccctgaacattgcccggtatgtggggcagatattgaaaggattgaaggg
gaagctgtcgcgcgttgtacggggggattggtgtgtggtgctcagcgtaaagaagcgctt
aggcattttgtttcccgtcgggcgatggatgttgacggcatgggagaaaagattatcgat
cagctagtggataaagagtatgtcaaaaccccggcagatcttttcaggctgacggcaggt
aaattgaccgggcttgatcgcatggggccgaaatctgcccagaatgtagtagatgcgttg
gaaaaagcaaaaaaaaccacctttgcccgttttctttatgcattgggtatccgtgaagtt
ggggaagcgaccgctgctaatctggctgctcactttggcgaactggataaattacgttct
gctgatgaggaagcattgaaagaggttcaggatgttggcgaagtggtggcgaaacatgtt
gttaacttcttcattgaacctcataaccaaacagttattgacgatctgattgatgatatt
ggtatcaactgggaaccggtcgtcgtaacgagagctgagaagattgatagcccattttcg
ggtaaaacagttgtactgacaggctccttgcatcagttatcccgggatgaagccaaagct
aaacttgttgcacttggggcaaaggtgacgggcagcgtttctaagaaaacagatttagtg
attgcgggtgaagccgctggttcaaaattagctaaagcgaatgagttaaatattccggtt
attgatgaagaagaaatgatccgtttattgggtgaataa
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integrated database retrieval system
