Pseudomonas luteola: FOB45_16520
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Entry
FOB45_16520 CDS
T06601
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plul
Pseudomonas luteola
Pathway
plul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FOB45_16520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plul03400
]
FOB45_16520 (ligD)
Enzymes [BR:
plul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FOB45_16520 (ligD)
DNA repair and recombination proteins [BR:
plul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FOB45_16520 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEU29275
UniProt:
A0A5P2SFB9
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All DBs
Position
1:1968540..1971107
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AA seq
855 aa
AA seq
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MANPLSEYSRKRNFKVTAEPEGNAPHARTSPEALQFVIQKHDARRLHYDFRLELDGTLKS
WAIPKGPSYDPKEKRLAVHVEDHPIAYGTFEGSIPEGEYGGGDVIVWDRGIWIPHGDAAT
DYAAGKLKFELQGEKLKGNWTLVRTRLHGNGKKEQWLLIKEKDADAKPHSEYDVTEALPD
SVLSEKTLPRLGKTATPVAKAAEPAKPRRARTTAAKATSSAAPLALPEMVEAQLATLVDA
PPAGDWLYEIKFDGYRLLTRIDDGKVSFITRNGKDWTHRLPEQAKALSALGLDNGWLDGE
IIVLDDNGVSDFQALQNAFDTGRNTTILYYLFDMPFCNGTDLRSYPLEERRRALKAVLDN
TQSNVIRYSEAFDVPADKILESACAIGLEGVIGKRAGSPYTSRRSNDWIKLKCKRRQEFV
IGGYTQPQGARSHFGALLIGLHDKDGSLRFAGKIGTGFTRESLAALHEHMQPYTTDTSPF
KNPPRGAQARGVTWLKPELLCEVAFAAITNDGIVRQGVFHGLRQDKPAQDIGLEQAQVVP
RKASSLAPKKALASTKKEGAEVAGVRISHPERVIDPFSKTTKLGVAEYYERIAPWMLPHL
KNRPVALVRTPEGIKGEQIFQKHKQTLAIPHIRELDPALDPGHAPLMVIDSLEALLGAAQ
MGTVELHTWNARADQIGKPDRMIFDLDPDPKLPWKQMLEATELLLTLLDELGFKAFIKTS
GGKGLHIVVPLERRDDWDSVKDFAQAIAQHMAAVIPERFSAKMGAQNRVGKIFIDYLRNR
EGATTVSAYSLRARPGLGVSVPIGREELKTLERGDQWTLETLFDHLDHRQDDPWADYATV
RQRITAAQRKTLGME
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacccgctgagcgagtactcccgtaagcgaaacttcaaggtgactgcagagcct
gaaggcaatgcgccccacgcgcgcacctcgcccgaagcgctacagttcgtgattcagaaa
catgatgcacgccggctgcattatgactttcgtctggagctggacggcaccttgaagagc
tgggccattcctaaaggtcccagctatgaccccaaggaaaagcgcctggctgttcacgtt
gaagatcatccgatcgcatacggcacctttgagggcagcattccagaaggcgaatacggt
ggcggagacgtcatcgtctgggatcgtggcatttggataccccatggcgatgcagctacc
gattatgcggcgggcaagctcaagttcgagctgcaaggcgaaaagctcaagggcaactgg
acgctggtgcgcacgcgcctgcatggcaacggcaaaaaagagcagtggctgctgatcaaa
gaaaaagacgctgacgccaaacctcatagcgaatatgacgtaaccgaggctctacctgac
agcgtactgagcgagaagacattaccgcgactgggcaaaacagcgacgcctgttgccaag
gcagcggagccagcaaaacccaggcgggcccgtaccacggcggcaaaggcaacatcttcc
gctgcgcctttggcactgcctgaaatggtcgaagcccaactggccacgctggtcgacgcg
cccccagcaggcgattggctctatgagatcaagtttgacgggtatcgcctgttgacccgt
attgatgatggcaaggtcagctttatcacacgcaacggcaaagactggacccatcgtctg
ccagaacaggcaaaggctctctcagcacttggcctggataatggttggcttgatggcgaa
attatcgtactcgacgacaatggcgtctctgatttccaggccctgcaaaacgctttcgat
acgggccgaaacaccaccatcctctactacctgttcgatatgccgttctgtaacggtacg
gacctgcgcagttatccactcgaagaacgtcgtcgtgctctcaaagccgtactggataac
acccagtctaacgtcatacggtattcggaagccttcgacgtacccgccgacaagatactg
gaaagtgcctgcgccattggcctggaaggtgtcattggaaaacgtgccggcagcccgtat
acctccaggcgcagcaacgactggatcaagcttaagtgcaagcgccggcaggagttcgtc
attggcggctatacccaaccccagggagcaagaagtcattttggcgcgctgctgatcggc
ctgcatgacaaggacggctcactacgctttgcaggaaagatcggaacgggatttacccgg
gaaagcctggctgcactccatgagcatatgcagccctacacaactgacacctcccccttt
aagaacccgcctcggggtgctcaagcccgcggcgttacgtggctcaagccggaattactg
tgtgaagtagcgtttgccgccatcaccaacgacggaattgtacgccagggtgttttccat
gggttgcggcaagacaagccggctcaggatattgggctcgaacaggcgcaggtcgtcccg
cgtaaggcttcgtcccttgcgccaaagaaagcgttagcttcaacgaaaaaagagggtgct
gaagtcgcaggcgtgcgcatcagccacccagagcgcgttatcgatccgttttcaaaaact
accaagctaggcgtcgcagagtactatgagcgtattgcgccatggatgttgccgcaccta
aaaaaccggccggttgccttggtacggactcctgaaggcatcaaaggcgaacagatattc
cagaagcacaagcaaaccctggcaatcccgcatatccgcgaattggacccggctctggat
ccaggccatgcaccgcttatggtgattgacagccttgaggcactgctgggcgctgcgcaa
atgggcacggtagaactgcacacttggaacgccagggctgaccagatcggtaaaccggat
cgcatgatatttgatcttgatcctgatcccaaactgccctggaaacagatgctggaggca
acggagctgttgctgaccctgctggacgagctgggcttcaaagcctttatcaagaccagt
ggcggcaagggcctgcacattgttgttcctctggaacgcagagatgactgggatagcgtg
aaagactttgcacaggccattgctcagcatatggcggcggttattccagagcgcttctcc
gccaagatgggcgcgcagaacagagtcggcaagatctttatcgattacctgcgcaatcgc
gaaggtgctaccacggtatcggcctattcgctacgggcacgcccgggtctgggcgtatcg
gtccctataggccgtgaggagctgaaaacacttgaacgaggcgaccagtggacactggaa
acgctgttcgaccatttggatcatcggcaagatgatccttgggcagattacgcaaccgtg
cgccagaggattaccgctgcgcagcgaaaaacgttaggtatggagtaa
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