KEGG   Pseudomonas luteola: FOB45_16520
Entry
FOB45_16520       CDS       T06601                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
plul  Pseudomonas luteola
Pathway
plul03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:plul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FOB45_16520 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plul03400]
    FOB45_16520 (ligD)
Enzymes [BR:plul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FOB45_16520 (ligD)
DNA repair and recombination proteins [BR:plul03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FOB45_16520 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QEU29275
UniProt: A0A5P2SFB9
LinkDB
Position
1:1968540..1971107
AA seq 855 aa
MANPLSEYSRKRNFKVTAEPEGNAPHARTSPEALQFVIQKHDARRLHYDFRLELDGTLKS
WAIPKGPSYDPKEKRLAVHVEDHPIAYGTFEGSIPEGEYGGGDVIVWDRGIWIPHGDAAT
DYAAGKLKFELQGEKLKGNWTLVRTRLHGNGKKEQWLLIKEKDADAKPHSEYDVTEALPD
SVLSEKTLPRLGKTATPVAKAAEPAKPRRARTTAAKATSSAAPLALPEMVEAQLATLVDA
PPAGDWLYEIKFDGYRLLTRIDDGKVSFITRNGKDWTHRLPEQAKALSALGLDNGWLDGE
IIVLDDNGVSDFQALQNAFDTGRNTTILYYLFDMPFCNGTDLRSYPLEERRRALKAVLDN
TQSNVIRYSEAFDVPADKILESACAIGLEGVIGKRAGSPYTSRRSNDWIKLKCKRRQEFV
IGGYTQPQGARSHFGALLIGLHDKDGSLRFAGKIGTGFTRESLAALHEHMQPYTTDTSPF
KNPPRGAQARGVTWLKPELLCEVAFAAITNDGIVRQGVFHGLRQDKPAQDIGLEQAQVVP
RKASSLAPKKALASTKKEGAEVAGVRISHPERVIDPFSKTTKLGVAEYYERIAPWMLPHL
KNRPVALVRTPEGIKGEQIFQKHKQTLAIPHIRELDPALDPGHAPLMVIDSLEALLGAAQ
MGTVELHTWNARADQIGKPDRMIFDLDPDPKLPWKQMLEATELLLTLLDELGFKAFIKTS
GGKGLHIVVPLERRDDWDSVKDFAQAIAQHMAAVIPERFSAKMGAQNRVGKIFIDYLRNR
EGATTVSAYSLRARPGLGVSVPIGREELKTLERGDQWTLETLFDHLDHRQDDPWADYATV
RQRITAAQRKTLGME
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggcgaacccgctgagcgagtactcccgtaagcgaaacttcaaggtgactgcagagcct
gaaggcaatgcgccccacgcgcgcacctcgcccgaagcgctacagttcgtgattcagaaa
catgatgcacgccggctgcattatgactttcgtctggagctggacggcaccttgaagagc
tgggccattcctaaaggtcccagctatgaccccaaggaaaagcgcctggctgttcacgtt
gaagatcatccgatcgcatacggcacctttgagggcagcattccagaaggcgaatacggt
ggcggagacgtcatcgtctgggatcgtggcatttggataccccatggcgatgcagctacc
gattatgcggcgggcaagctcaagttcgagctgcaaggcgaaaagctcaagggcaactgg
acgctggtgcgcacgcgcctgcatggcaacggcaaaaaagagcagtggctgctgatcaaa
gaaaaagacgctgacgccaaacctcatagcgaatatgacgtaaccgaggctctacctgac
agcgtactgagcgagaagacattaccgcgactgggcaaaacagcgacgcctgttgccaag
gcagcggagccagcaaaacccaggcgggcccgtaccacggcggcaaaggcaacatcttcc
gctgcgcctttggcactgcctgaaatggtcgaagcccaactggccacgctggtcgacgcg
cccccagcaggcgattggctctatgagatcaagtttgacgggtatcgcctgttgacccgt
attgatgatggcaaggtcagctttatcacacgcaacggcaaagactggacccatcgtctg
ccagaacaggcaaaggctctctcagcacttggcctggataatggttggcttgatggcgaa
attatcgtactcgacgacaatggcgtctctgatttccaggccctgcaaaacgctttcgat
acgggccgaaacaccaccatcctctactacctgttcgatatgccgttctgtaacggtacg
gacctgcgcagttatccactcgaagaacgtcgtcgtgctctcaaagccgtactggataac
acccagtctaacgtcatacggtattcggaagccttcgacgtacccgccgacaagatactg
gaaagtgcctgcgccattggcctggaaggtgtcattggaaaacgtgccggcagcccgtat
acctccaggcgcagcaacgactggatcaagcttaagtgcaagcgccggcaggagttcgtc
attggcggctatacccaaccccagggagcaagaagtcattttggcgcgctgctgatcggc
ctgcatgacaaggacggctcactacgctttgcaggaaagatcggaacgggatttacccgg
gaaagcctggctgcactccatgagcatatgcagccctacacaactgacacctcccccttt
aagaacccgcctcggggtgctcaagcccgcggcgttacgtggctcaagccggaattactg
tgtgaagtagcgtttgccgccatcaccaacgacggaattgtacgccagggtgttttccat
gggttgcggcaagacaagccggctcaggatattgggctcgaacaggcgcaggtcgtcccg
cgtaaggcttcgtcccttgcgccaaagaaagcgttagcttcaacgaaaaaagagggtgct
gaagtcgcaggcgtgcgcatcagccacccagagcgcgttatcgatccgttttcaaaaact
accaagctaggcgtcgcagagtactatgagcgtattgcgccatggatgttgccgcaccta
aaaaaccggccggttgccttggtacggactcctgaaggcatcaaaggcgaacagatattc
cagaagcacaagcaaaccctggcaatcccgcatatccgcgaattggacccggctctggat
ccaggccatgcaccgcttatggtgattgacagccttgaggcactgctgggcgctgcgcaa
atgggcacggtagaactgcacacttggaacgccagggctgaccagatcggtaaaccggat
cgcatgatatttgatcttgatcctgatcccaaactgccctggaaacagatgctggaggca
acggagctgttgctgaccctgctggacgagctgggcttcaaagcctttatcaagaccagt
ggcggcaagggcctgcacattgttgttcctctggaacgcagagatgactgggatagcgtg
aaagactttgcacaggccattgctcagcatatggcggcggttattccagagcgcttctcc
gccaagatgggcgcgcagaacagagtcggcaagatctttatcgattacctgcgcaatcgc
gaaggtgctaccacggtatcggcctattcgctacgggcacgcccgggtctgggcgtatcg
gtccctataggccgtgaggagctgaaaacacttgaacgaggcgaccagtggacactggaa
acgctgttcgaccatttggatcatcggcaagatgatccttgggcagattacgcaaccgtg
cgccagaggattaccgctgcgcagcgaaaaacgttaggtatggagtaa

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