Pseudomonas luteola: FOB45_18470
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Entry
FOB45_18470 CDS
T06601
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plul
Pseudomonas luteola
Pathway
plul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOB45_18470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plul03400
]
FOB45_18470
Enzymes [BR:
plul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOB45_18470
DNA repair and recombination proteins [BR:
plul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOB45_18470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AroM
ERCC3_RAD25_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEU29640
UniProt:
A0A5P2SH80
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All DBs
Position
1:2390971..2394420
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRIPSIPDTAGRQHWGNLPGAALSLAIAEAASAASQRFTLLLTPDSQSAERLEQELR
FFAPRLPVLHFPDWETLPYDIFSPHQDIISQRVAALYRLPELDHGILVVPIATALHRMAP
TRFLLGSSLVLDVGQRLDVEATRARLEAAGYRYVDTVYEHGEFTVRGALIDLFPMGSSLP
YRIDLFDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPLHKEAVTGFRARFRERFDVDY
RRSPLYQDLASGLTPPGIEYYLPLFFDETSTLFDYLPQSAQVFSLPGIEQASEQFWTDVR
TRYEDRRVDPERPLLPPAEVFLPVEECFARLKQWPRIVISGDDIEPGVGRERFSARPLPN
LAIEAKANQPLAALQNFLADFDGRILFTAESAGRREVLLELLARINLRPTSVEGWEDFQE
TDERLSITVAPLDEGLLLEKPDVALIAESPLFGQRIMQRRRREKRNEHGDNVVKNLTELR
EGAPVVHIDHGVGRYMGLVTLELEGQAQEFLLLEYADEAKLYVPVANLHLIARYSGADDA
LAPLHKLGSETWQKAKRKAAEQVRDVAAELLDVYARRAAREGFAFTDPKADYETFAAGFP
FEETPDQQVTIDAVLKDMLSGKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPT
TLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKDVEKAVQELADGNIDIIIGTHKLLQDDV
KLKNLGLVIIDEEHRFGVRQKEQFKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRKSMTPDAEKRLEAIAGAQDLGAGFILATHDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPDINLRVPALIPEDYLP
DVHTRLILYKRIASAADEDALKELQVEMIDRFGLLPNAVKNLVRLTLMKIKAEALGVVKV
DAGPQGGRIEFTHDTKVDPLVLVKMIQSQPNKYRLEGATIFKFQVPMERPEERFNIIEAL
FERLTPENV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttttgcgcattccatcaattcctgataccgccggacgacagcattggggaaat
ctccccggagccgcgctaagtctggctattgccgaggctgcaagcgctgccagccaacgc
ttcaccctacttttaacgccggacagccagagcgccgaacgcctggagcaagaactgcgc
ttctttgctccgaggcttcccgtactgcatttccctgattgggaaacgctgccttacgat
attttctcgccgcatcaagacattatttcccaacgtgtagcggcgctctatcgtctacca
gagcttgatcacggcattttggtagtgcctatcgcaacagccctacatcgtatggcacct
acacgcttcctgttaggcagcagtcttgtgctggatgtggggcaacgtctggatgtagag
gctacgcgggctcgcctggaggcagccggataccgctatgtcgataccgtctacgagcat
ggcgaatttacagtccgtggagcactgattgatctcttcccgatgggcagcagtctcccg
taccgaatcgacttattcgatgacgaaattgagacattacgcacatttgatccagagacg
cagcgatcaatcgacaaggtagactcgatccgactgcttcctgctcgagaatttccgctg
cataaagaagccgtcacagggttcagggcgcgctttcgagaacgttttgatgtggattat
cgtcgcagccctctttaccaggatctggcgagtggcttgacgcccccgggcatcgagtac
tacttgccgctgttctttgatgagacgtcgacgctatttgactacttgcctcagagcgca
caggttttttcgttaccaggcatcgagcaggcatctgaacagttctggacggacgtacgg
acccgttatgaagaccgtcgcgttgacccggagcgtcctctattaccaccggctgaagtt
ttcctcccggtagaagagtgcttcgctcgtctcaagcaatggccacgcattgttatcagt
ggcgatgatatcgagccgggcgtgggtcgtgagcgtttttcagcgcggcctctgcccaat
cttgccattgaggccaaggctaatcagccattggcggccttgcagaacttcctggctgat
tttgatggacgcatcctgtttacagcagaatccgccggtcgtcgggaggtgctgcttgag
ttgctggcacgtatcaacctgcgtcctacatcggtcgagggatgggaagattttcaggaa
actgacgagcgcctgtcgattacagtcgcgccgctcgacgaaggcttgctactcgaaaaa
cccgatgtagccctcattgccgaaagtccgttgtttggtcagcgtatcatgcagcgtcgt
cgccgggaaaagcgcaacgagcatggtgacaacgtcgtcaagaacctgaccgagctacgc
gagggcgcaccggtcgtgcatattgatcacggcgttgggcgttatatgggtctggtaacg
cttgagttggagggccaagcgcaagaatttctactattggaatatgcagacgaagcgaag
ctctatgttccggttgccaacctgcacctgattgcccgttattcaggcgctgacgacgcg
cttgctccactacacaaactaggttctgaaacctggcagaaagccaaacgcaaggcagct
gagcaggtgcgcgatgttgccgccgaactgctggatgtatatgcccgtcgagccgctcgg
gaaggatttgcgtttactgaccccaaggcggattacgaaaccttcgcagcaggctttccg
tttgaagaaacacctgaccagcaagttactatcgatgctgtactcaaggatatgctgtca
ggcaagcccatggatcgtctggtctgcggcgatgtaggctttggcaagaccgaagtcgcc
atgcgggcggcgtttgtagcggtacacagcggcaagcaggtggccgtcctggttcctaca
acactgttggcgcagcagcattacaacagctttcgcgaccgctttgccgactggcctgtg
cgtgtcgaggtgatgtctcgcttcaagtctgccaaggatgttgaaaaggccgtacaggaa
ctggctgacggtaatatcgacattattatcggcacacacaaactgctgcaggacgacgtg
aagctcaagaatctgggactcgtcatcattgatgaggagcaccgatttggcgtgcgtcag
aaggagcaattcaaagcgctacgtagcgaagtcgatattctgacccttacggccacaccg
attccgcgcacgctcaacatggctgttgcaggtatgcgcgatctttccatcatcgccact
ccgccggctcgacgtttgtcggtccggacgttcgtcatggagcagcagaacgcggttatc
aaggaagcccttcttcgcgagctgctacgcggcggacaggtctactaccttcacaacgaa
gtaaagaccattgaaaagtgcgcccgggatcttgcggagctggtgccggaggcccgtatt
ggcattggtcatggacagatgcgcgaacgggaactggaacaggtcatgagcgacttctac
cacaagcgcttcaacgtgctggtagcgtcaactattatcgagaccggtattgacgttccc
agcgccaataccatcattatcgagcgtgcagataagtttggcctggcgcagctgcatcag
ctgcgtggacgtgtgggacgaagtcaccaccaggcgtatgcctacctgctaacaccgcca
cgaaaaagcatgacgcctgatgctgaaaaacgtcttgaggcgattgctggtgcgcaggac
ctgggcgcaggcttcattctggccacccatgaccttgaaatacggggcgccggcgaactc
ctgggcgaaggtcaaagcggccagatccaggctgtaggctttacgttgtacatggaaatg
ctggaacgggcggtcaaggctattcgcaaaggtgaacaaccgaacctggaacagcccctt
ggcggtggtccggacatcaacctgcgggtacctgcgctcattccagaggactatctgcca
gacgtccatactcgcctgattctgtacaagcgtattgcttctgcagccgatgaagatgca
ctcaaggagctacaggtcgaaatgattgaccgctttggccttttacccaatgccgtcaaa
aacctggtccgcctgacacttatgaagatcaaggcagaagccctaggtgttgtgaaggtt
gatgccggcccgcaaggcggtcgcatcgagttcactcatgatacgaaggttgatccgttg
gtactggtcaaaatgatacaaagccagcccaacaagtatcgccttgagggtgcaaccatc
tttaaattccaggtaccgatggagcgtcctgaagagcgtttcaatatcattgaggcactt
ttcgagcgcttgaccccggaaaacgtctag
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integrated database retrieval system
