Pseudomonas luteola: FOB45_22345
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Entry
FOB45_22345 CDS
T06601
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plul
Pseudomonas luteola
Pathway
plul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB45_22345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plul03019
]
FOB45_22345
03016 Transfer RNA biogenesis [BR:
plul03016
]
FOB45_22345
Enzymes [BR:
plul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FOB45_22345
Messenger RNA biogenesis [BR:
plul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOB45_22345
Transfer RNA biogenesis [BR:
plul03016
]
Prokaryotic type
tRNA degradation factors
FOB45_22345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
TRAM_2
AbiEi_4
FANCAA
Motif
Other DBs
NCBI-ProteinID:
QEU30353
UniProt:
A0A5P2SJP5
LinkDB
All DBs
Position
1:complement(3248684..3251350)
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AA seq
888 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPVPSRELILSHLAQRGGPASRTQLIEEFGLTEEDQFEALR
RRLRAMERDGQLLYTRRGAYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMR
LVFDGDKALARVSGLDRRGRREGALVEVVHRAHESVVGRFFEESGIAYVVADSPRIQQQV
LVPAGKHGGAQHGQFVQVHITDWPTVHRQAQGEVVEVLGDYLAPGMEIEVALRSYDIPHE
WPVDVEKEAAKLKPEVSEKDKEKRVDLRNVPFVTIDGEDARDFDDAVYAEKKKSGGWRLF
VAIADVSHYVKVGSALDTEAARRGNSVYFPGRVVPMLPEILSNGLCSLNPLVDRLAMVCE
MTISATGKLTGYQFYEAVIHSHARLTYTRVSQLLETPESTEAQQFREQLPQLVPHIQELY
ALYKVLVITRQERGAIDFETQETRIVFGADKKISEIRPTQRNDAHKLIEECMLCANVATA
KFLEKHSIPALYRVHDAPPLEKQTKLRQFLGEIGLTLTKGKATPTPKDYQALLKAVHDRP
DYRLIQTVMLRSLSQAVYSPDNEGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVIRSKL
ETRHVKRAGAAAMPKSRIYPYDEAQLDQLGEQCSMTERRADEATRDVANWLKCEYMRDRV
GETYPGVITAVTGFGVFVELSDIYVEGLVHVTALPSDYYHFDAVHHRLSGERSGRSYRLG
DLVEIVVARVDLDERKIDFELSETAQSAPAGRRQRGDTKSSRDKSRKREKTQVPAQNSAV
GIEVSPELLKQAEVLLGNTDVKRSRAVKRALLDEAKTGGEKPARAQPARQEAAPARTPAK
KGKKADSAKPGKPAKSAKATKPSKHRKGPSKAKAQAASGEVRKRKVKS
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctagagaagcggaaaaatacgaaaac
cctgttccaagtcgcgagcttatcctgtcgcatctggcgcagcggggcggtcctgcctcg
cgcacgcagctgatagaagagttcggcttgacggaagaggatcagtttgaagcattgcgc
cgtcgccttcgtgccatggagcgggatgggcagcttctttatacgcgtcgcggagcttac
gcccccgttgataagctcgatcttgtctgtgggcgagtcagcggtcaccgtgacggcttt
ggctttctcatcccggacgacggaagtgatgaccttttcctgagccctgcgcaaatgcgg
ctcgtgttcgatggtgacaaagcgctggcacgtgtatccggtctggatcgtcgaggccgc
cgtgaaggtgctctggtcgaagtcgtacaccgtgcccatgagagcgtggtcggccggttc
tttgaagagagcggcatcgcgtatgtagtggcggacagccccaggatccaacagcaggtg
ctggtccccgccggcaagcatggcggagcgcagcatgggcagtttgttcaggttcatatc
accgactggcctactgttcatcgccaggcccagggcgaggtagttgaggtgctgggtgat
tacctcgcgccggggatggaaatcgaagtggcattgcgcagctacgatattccccatgag
tggccggtcgatgtagagaaagaggcggccaagctcaagcctgaagtctctgagaaagat
aaggaaaagcgggtcgatctgcgcaacgtgccgttcgtgacaattgacggtgaagatgcg
cgtgactttgatgacgcggtctatgccgagaagaagaagtccggaggctggcggctcttc
gtcgcgattgcagacgtgtctcattatgtgaaggtcggctccgcgctagacaccgaggcc
gcacgccggggcaactcggtatatttcccggggcgcgtagtgcccatgctgcctgaaatc
ctgtccaatgggctgtgctccctgaaccccttggtggatcgcctggccatggtatgcgag
atgaccatctcggcgacaggcaagctcacgggctatcagttctacgaggcggtgatccat
tcccatgcgcgcctgacctatacccgggtcagtcagttactggaaacgccggaaagcact
gaggcgcagcagttccgtgagcagctgccgcaactggtgccgcatatccaggaactgtat
gccttatataaggtgctcgtgattacccggcaggagcggggtgctatcgatttcgagaca
caggagacgcgaatcgtctttggtgccgacaagaagatttcggaaatccggcctactcag
cgtaacgacgcccacaagctgatcgaagaatgcatgctgtgcgcgaacgtagcgacagcc
aagtttctcgagaagcacagcattccagccctgtaccgggttcacgatgcgccgccgctt
gagaaacagaccaagttgcggcagttcctgggtgagatcggcctgactttgacgaagggc
aaggctacaccgacgcccaaggactaccaggcgctactcaaagccgttcatgaccgtccc
gattaccgtctgatccagacggtaatgctgcgctcactgagccaagcggtttacagcccg
gacaatgagggccattttggtctcaattacgaagcctatacacacttcacatcgcctatt
cggcgttatccggacctattggttcaccgcgcaattcgcagcgtcattcgttccaagctt
gaaacacggcatgtgaagcgtgccggcgccgctgccatgcccaagtcgcgtatctatccg
tatgatgaggcgcagctggatcagctgggtgagcagtgctccatgaccgaacgccgtgcc
gacgaagctacacgagacgttgcgaactggctcaagtgcgagtacatgcgtgatcgggtc
ggcgagacgtacccgggtgtcatcaccgctgtgacgggatttggcgtgtttgtcgagctg
agcgatatctacgtcgaggggcttgttcacgtcacggcgctgccaagcgactattatcat
ttcgatgccgtacaccatcggctttcaggtgagcgtagcgggcgcagttatcggctgggt
gacttggtcgaaatcgtggtggcgcgtgtggatctggatgagcgcaagatcgacttcgag
ctgtccgagacggcacaatcggctccggcaggtcgtcgccagcgaggcgataccaagtct
tcaagagacaagtctcgaaagcgcgagaaaacccaggtacctgcccagaattcagcagta
gggatcgaggtctcgcctgaattgctcaagcaggcagaagtgttgctgggcaatacggac
gtcaagcgcagtcgtgcagtcaagcgcgccctgctggatgaggccaagaccggtggagaa
aagcccgccagggcgcaacctgccagacaggaagccgccccggcgcgcacgccagcaaag
aaaggtaaaaaggcagacagcgctaaacccggcaagccagctaaatcggccaaggcaacg
aagccgagcaaacatcgcaaggggccttccaaggccaaggcacaggcggcttctggtgaa
gtccgtaaacgtaaggtcaagtcatga
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