Paenibacillus lycopersici: GXP70_25745
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Entry
GXP70_25745 CDS
T07013
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plyc
Paenibacillus lycopersici
Pathway
plyc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GXP70_25745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plyc03400
]
GXP70_25745
Enzymes [BR:
plyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GXP70_25745
DNA repair and recombination proteins [BR:
plyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GXP70_25745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QHT63031
UniProt:
A0A6C0G4Y5
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All DBs
Position
5866482..5867381
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AA seq
299 aa
AA seq
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MSPSVKGTIVVEGQELTISNPEKLLWPEMGITKAVFLQRLAALSPWLLKHCQDRLLTTIR
YPDGVTGKSFYQKNCPTPAPDFVETVQSDSIAYVKLTSLPVLLWLGNLACLEYHASFDRI
SDPAHPTEWVLDLDPSLEEEPRIMEAALLTGDLLRSLGIASTPKTSGATGIQIIIPLVKD
LTFDELRRIGEFVGAYLSDKHPKLFTIERLKKHRGDLIYVDYLQHYQGKTIIAPYSPRAR
AGASVSTPLHWDEVRRNAAITDFHLLNIEDRLNREGDLLDQVPAQSLRPILSFIGMGRG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgagcccctccgtcaaaggcacgatcgtcgtcgaggggcaggagctgacgatcagcaac
ccggagaagctgctgtggccggagatgggcattacgaaagccgtcttcctgcagcggctt
gccgccctctcgccatggctgctcaagcattgccaggaccggctgctgacaacgattcgc
tatcccgacggcgtgaccggcaaatcgttctaccagaagaactgcccgacgcccgcgccg
gacttcgtcgagacggtgcagagcgacagcatcgcttacgtcaagctgacctcgctgccc
gtgctgctgtggctcggcaatctggcctgcctggaataccatgcttccttcgaccggatc
agcgaccccgctcatccgacggaatgggtgctcgatctcgatccgtcgctggaagaggag
ccgcgcatcatggaagccgcgctgctgaccggcgatctgctgcggtcgctcggcatcgcg
tccacgccgaagacgtccggcgctacgggcatccagattattatcccgctcgtgaaggac
cttaccttcgacgagctgcggcgcatcggcgagttcgtcggcgcttatttatcggacaag
catccgaagctgttcacgatcgagcggctcaagaagcatcgcggcgacttgatttacgtc
gattatttgcagcactatcagggcaaaacgatcatcgccccctactcgcccagggcgcgc
gccggcgccagcgtctccacgccgctgcactgggacgaggtgcggcggaatgcggccatc
acggatttccacctcctcaacatcgaggaccggctgaaccgcgagggcgatctgctggat
caagtgccggcgcagtcgctgcggccgattctatcgtttatcgggatgggccgcggctag
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