Pseudoalteromonas luteoviolacea: S4054249_11120
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Entry
S4054249_11120 CDS
T04577
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plz
Pseudoalteromonas luteoviolacea
Pathway
plz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
S4054249_11120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plz03400
]
S4054249_11120
Enzymes [BR:
plz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S4054249_11120
DNA repair and recombination proteins [BR:
plz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
S4054249_11120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOT08361
LinkDB
All DBs
Position
1:2616790..2620263
Genome browser
AA seq
1157 aa
AA seq
DB search
MALVQWNELPWVKSAKDKIHWGQLLGSSLAITISEGVKNNQPLVVLVTPDTPSALRLETE
LGYLLGEDNVMVFPDWETLPYDHFSPHQDIISQRLASLNALRTKQQGVLLIPVATLMLRT
APPEFIYGNALQFKVGDTLDAQGLKETLTQAGYRNVQQVMEHGEFAVRGSIIDLYPMGSQ
HPYRLDFFDDELDSIRLFDIETQRSSETIKSIDLLPAHEFPTNDSDIERFRIQYRETFGA
SSEQDSIYMQVTRGNWPAGIEYYLPLFYDKLATIFDYLPNDAIFMHLGDIEHAASDFWSD
VSKRYENRRVDPLRPLLEPKELYLNVESLFEAFSHYPRIRLSQASLGTKAGHSNVNAALI
DDVRIDHKQADPYSAIVSYITEQKQQKGKVLFSVESDGRRESLLTLLKPTGLKLKEFESF
EAFTKSRTDVGLVVSPLEASVFLDGSKPLSLITEQELLGIKVSQRRRRKHKYEQGQDALI
RNLAELKEGQPIVHLDHGVGRYLGLQTIDAAGVATEFVTIIYSGDAKLYVPVSSLHMLSR
YSGGEEASAPLHKLGSDVWEKAKRKAAEKVRDVAAELLDIYAKRQSKPGHQFNLDGGAYR
DFSNSFPFEETDDQRNAIEAVIGDMQTNQAMDRLVCGDVGFGKTEVAMRAAFVAINDNKQ
VAVLVPTTLLAQQHFENFKDRFADLPIEVGVLSRFNSTKEQKQTLTALEDGKIDIVIGTH
KLIQENIKFKDLGLLIVDEEHRFGVRQKEKIKKLRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRERNDELIREAILREIKRGGQVYFLHNNVETIEKTAADISA
LVPEANIAVAHGQMRERELEHLMSDFYHQKHNVLVCTTIIETGIDIPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTRNSQSLTKDAVKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQIQTVGFTLYMEMLEQAVQALKDGKEPTLENLLQQQSEVDLKLPAL
LPDDYIHDVNTRLSMYKRIATMSSENELDELKVELIDRFGLLPDAAKNIFEIQLLKCKAQ
QIGVQKIEANPKGGYFEFSNNTSVNPTFIIGLIQSNPAIYRMEGASKLRFNIEEKNGQER
LKLINAMMDDFQKKAVA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcattagtgcagtggaatgagctaccttgggtaaagtcagcaaaggataagatccat
tggggtcaattactcggtagtagtttggcaattactatcagcgagggagtaaaaaacaat
caaccccttgtcgtgttagtcacgccagacacccccagtgcacttcgcttagaaacggag
cttggttacttacttggtgaagacaatgtcatggtttttccagattgggaaaccctcccc
tatgaccacttttcaccgcaccaagatattatttctcagcgtttagccagccttaatgcg
ctacgcacaaagcaacagggcgtgctactcatcccagttgcaacattaatgctcagaacc
gcaccgcctgaatttatctatggcaatgcactgcaatttaaagtgggtgatacgttagat
gcgcagggtcttaaagaaacccttactcaagcgggttatcgtaacgtacagcaagtgatg
gagcatggtgaattcgctgtgcgtggctctatcatcgacctttacccaatgggtagccag
catccttaccgtttagatttttttgatgatgagctagatagtatccgtctttttgacatt
gagacgcagcgttcaagtgaaacgataaagtcaattgacttattgcccgcacacgaattc
ccaaccaacgacagtgacattgaacgatttcgcattcaatatcgcgaaacttttggagca
agctctgagcaagactccatctacatgcaagtaacacgtggcaactggccagcaggtatc
gaatactacttgccattattttatgacaagctggctaccatttttgattatttaccaaac
gatgccatcttcatgcatctaggtgacatcgaacacgctgccagcgacttttggtcagat
gtcagcaaacgatacgagaaccgtcgggttgatccattacgaccattactagaaccaaaa
gaactctaccttaatgtcgagtcgctttttgaggcgttttcacattacccaagaattcga
ttaagccaagcatcacttggtaccaaagcgggtcactcgaacgtaaatgcagcgcttatt
gatgatgtacgtattgaccacaagcaggcagatccgtattcagccattgtgagttacatc
acagaacaaaaacagcaaaaaggtaaagtacttttcagtgttgagtcagacggtcgtcgt
gaatcattattaacgcttttaaagccaacaggcctgaaactaaaagaattcgagtccttt
gaggcattcactaagagtcgtactgacgttggtttagttgtcagcccacttgaagcgtct
gtttttcttgatggttctaagcctctctcgctgattaccgagcaagagttacttgggata
aaggtctcccagcgcagacgccgcaagcacaaatacgaacagggacaagatgcccttatt
cgtaatctagcagagctaaaagaaggtcagcctattgtgcatttagaccatggtgttggt
cgctaccttggtttacaaaccattgatgcagcgggtgttgccacagaatttgtaaccatt
atctattccggcgatgccaagctctacgtacctgtttcgtctttacatatgctgagtcgc
tactctggtggtgaagaagcctctgccccgctccataaattggggtcagatgtttgggaa
aaagccaaacgtaaagcggctgaaaaagtacgagatgtcgcagcagagctgttggatatt
tacgctaaacgacaaagtaaacctgggcatcagttcaatctcgatggcggagcatacaga
gacttcagtaacagctttccatttgaagaaacagacgatcagcgcaacgccattgaggct
gtaataggcgacatgcaaaccaatcaagcaatggatagactagtttgtggtgatgtcggc
tttggtaaaactgaagtcgccatgcgcgccgcctttgttgccataaacgacaataaacaa
gttgccgtgctagtaccaacaacgctccttgcacaacagcactttgaaaacttcaaagac
cgctttgccgatctgccaatcgaagtcggtgtattgtctcgctttaacagcacaaaagaa
caaaaacaaacactcactgcactagaagacggcaaaatagatatcgttattggcacgcac
aagctcattcaagaaaacattaagtttaaagacttagggttattgattgtcgatgaagag
caccgattcggtgtgcgtcaaaaagaaaagattaaaaagctacgtgcagacgtagacatc
ttaacgctgactgcaacaccaatccctagaacgcttaatatggcgatgagcggtatgcgt
gacttatctattatcgcaacgccacccgctaagcgtcttgcagttaaaacctttgtgcgt
gagcgtaatgatgagcttattcgtgaagcaattttacgtgagatcaaacgcggtggtcag
gtttacttcctgcacaacaacgttgagaccatcgaaaaaaccgcagcggatatctcagcg
cttgtaccagaagccaatatcgctgttgcacatggtcaaatgcgcgaacgcgagctcgag
catttgatgagtgacttttaccatcaaaagcacaacgtgttggtatgtaccaccatcata
gaaacaggtatagatattccaaccgcgaataccatcattatggaccgtgctgacaaactt
ggcttagcacagctacaccagcttcgtggccgagttggtcgtagccatcaccaagcatat
gcatatttactaactcgaaatagccaaagcttgaccaaagatgcggtaaaacgactgcaa
gcgatcgaatctcttgaagacttaggcgctggttttgcacttgcaacgcatgatttagag
atccgtggtgcgggtgagcttcttggtgacgaccaaagcggtcaaatccaaactgttggt
tttaccttatacatggaaatgctagagcaagccgtccaagcgctcaaagatgggaaagag
ccaacgcttgagaacttattacagcaacaaagcgaagttgacttgaaactaccagctcta
ctgcctgatgattacatccatgatgtgaatactcgcctgagcatgtacaagcgcattgct
actatgtcttctgaaaatgaactagacgagttaaaggttgagctaatagaccgttttggc
ttattaccagatgctgctaagaatattttcgaaattcagctattaaaatgtaaagcacaa
caaataggcgttcaaaagattgaagcgaatccaaaaggtggctattttgaatttagtaat
aacaccagtgttaacccaacgttcatcattgggctgatacaaagcaaccctgccatatat
cgtatggaaggtgcgagcaaactacgctttaatatagaagaaaaaaatggccaagagcgt
ttgaagctcattaacgccatgatggatgactttcagaaaaaggctgttgcatga
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integrated database retrieval system
