Pseudoalteromonas marina: CPA52_11100
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Entry
CPA52_11100 CDS
T06578
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmaa
Pseudoalteromonas marina
Pathway
pmaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPA52_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaa03019
]
CPA52_11100
03009 Ribosome biogenesis [BR:
pmaa03009
]
CPA52_11100
Enzymes [BR:
pmaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPA52_11100
Messenger RNA biogenesis [BR:
pmaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPA52_11100
Ribosome biogenesis [BR:
pmaa03009
]
Prokaryotic type
rRNA helicases
CPA52_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATG58732
LinkDB
All DBs
Position
2390378..2392180
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AA seq
600 aa
AA seq
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MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRIAALQAKLSIALENKDITFFNEVATNMAEKLDLPLENLA
GALLCLAQQQSPIKVEEVKIQPRERNERNSRNDRGDRGRRNERGGERSERKPRERNSRDA
GPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDQHSTVQLPQNMPKDVLD
HFQKVFICKRPMGMTITQDQGPAEPRGERPSGDRKRNDGPRGDKRSGPRKERRPVSFTAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaaccgcagcatttgca
ctgccgttactaaacaatattgacccgtctgtgaaacagccacagatccttgtactcaca
cctacacgtgagcttgcgatccaagttgctgaggcatttgaacaatatgcaaaaggtact
cgtggtgttgaagtattagcactatacggtggccaaagctacagcattcaattaagcgca
cttcgtcgtggcgctcaaatcattgttgctactccgggtcgattaatcgatcatattaac
cgtggcactatcaagtttgatgctcttcaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgttgaaaacatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgaccatgcctaagcaaattcaaaacatcagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgtaactcgacagtatcgtctgttgag
caagtgttttggaacgcaagcgtacataaaaacaaagcgattgttcgctttttagaagct
gagcaatacgaaggtgctattgttttcgtacgtacacgtaacgataccgttcaacttgct
gaattattagagcgcgaaggtttctctgcagctccgcttaatggtgacatgaaccagcaa
gcacgtgaacgcactgttgaccgcttaaaaagtggcatgctgaacgttgttattgcaaca
gacgtagcagctcgtggtcttgatgtagaccgtttaagcttagttatcaactacgacatt
ccacaagattctgaagcctacgttcaccgtattggtcgtacaggtcgtgcaggtcgtact
ggtaaagcaattttatttgttaagcataacgaacgttacttacttaaaaatatcattcgt
catactaagtctgaaattgcacaggttgaattaccaacagctaaagttgttgaagaaaaa
cgtatcgctgcgttacaagcaaaattaagtattgcgcttgaaaacaaagacattacgttc
tttaacgaagtggctactaacatggctgaaaagcttgaccttcctcttgaaaacttagcg
ggtgctttactgtgtttggcacagcaacagtcgccaattaaagttgaagaagttaagatt
caaccacgtgagcgtaatgaacgcaattcacgtaatgaccgtggtgatcgcggacgtcgt
aacgaacgtggtggtgaacgttctgaacgtaaaccgcgcgagcgtaacagccgtgatgca
ggccctatggatacttaccgtatcgaagtaggtcgtgagcatggtgttcaggttaagaat
attgttggcgcaattgctaatgaagctgatatctcaagtaagtttattggtgacattcgt
ttacacgatcaacacagcactgttcagttaccacaaaacatgcctaaagatgtactggat
catttccaaaaagtgtttatttgtaaacgcccaatgggtatgacaattacacaagatcaa
ggcccagctgaaccacgtggcgaacgcccatctggtgatagaaaacgtaacgatggccca
cgcggtgataagcgtagcggacctcgtaaagaacgtcgcccagttagctttaccgctaag
taa
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