Papilio machaon (common yellow swallowtail): 106713977
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Entry
106713977 CDS
T05138
Name
(RefSeq) uncharacterized protein LOC106713977
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106713977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmac03021
]
106713977
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106713977
Transcription machinery [BR:
pmac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106713977
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106713977
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_UBZ
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
106713977
NCBI-ProteinID:
XP_014362375
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
MAKEIAEEYASSLADLTVNSKPLINMLTILAEENIDHAGVIVDTVEKHLEKVHPDIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVDEKVRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQQSNIHVNPNFLKKNTAAAPTTSAAATLTEDEEKMRTILAKK
EQELLMLQRKKIEMELEKTRRQLELAEKNAKMVGPSNVSAMPIAVVNPAPAPNTATTATP
APTVSVKQRLGPPVNKPAGGRIAPVSGALVTARRDPRLARRPPPPQTAPVVPPVPHVPHV
PHVPLVPHVPLASNGPPIAPNVFDIKPLERVTKRKNVITIDVRLDAAKDPRRRDPRLSDR
ARERRAKKTDEERERKREELRQEKDKARDNAAYSIRTAVDDYIDRLQISDPKKINKLPPI
PKINRDENKDDEPAPTKKRKENPKERRKKKEQNSSKDSSSSSSPEKRQKSKDTRKKPKAK
LEVEETPPAVAETVTFKVLKNFNKDNYMCRNKKKSESPERDTEEKPEDKKSNSEPTNVLD
VVMETKDVDLRVLQPVLEASAAAVAQKRPSTETIEGKPKKNKLDKFDILFGNEDVDLRQL
PQVDELVPPPPPTITESPKVDVSLDDAEDDGLISTSSPKQKDWHEVKEKKDDTKKTPSKL
DLVRAKLAEATKGKDRLGRPLLFSKSPSIERERRRTLSSDDGDHKSDSGDDFTPEDHKKT
ISIIMSQAKEQFSDGKLDKNQYNTLMYQVLQLNEKLKLKEAKQRESLELSKRKLKAHIDE
ENHKVASPKTSPSDMNNFGDIDERVAPSAYLDTPPDSQNYMQDSDMRKNPIGPDAADGKA
QGLLPLPPMMPMYMGPFPMWRGQPRPRMEEFGPRRFRGPMPPFFRGKFDKRAPPRLPFDP
RLPLPLPTPKLGMCQGDSPLLPYERAESPPPIGTPGHTIPPTNLQILEYIDQDPVKTIQI
DGVPREIRFYGETAVIMLDWDDPREIKFLPGCRRVTFDNKDSVILNFNEGYKQVEIDDQV
FDIRFGAPTRELYINGRWYECFFGGQPLGVLIDGKPRLLHLEGPLPQVDIGKTKRTDLVA
GKINLIINATQMCPVYLDAKVQKIMINGQFFTLRFVDALRTVLINEKPFKVEFGDLPRPI
FIGKEKFFVRFSALPRHIKPGQIEIADMEGVSVPASLPAPAPDSPTKIEKDPEEADEEPI
ARPKKSPSPDGENQGLDMLASLMPSSMAPASGSEYSVAEPMFSKTDKIPGLETPAEEKPA
PATILGNININDLFAKLVATGIVQVPKDSKEDIKTDEIIPKQDKNIIRQVDLLKPETLKI
KQPALVSRLYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQNRRERDSARRAHSRTWHYDL
PDWLRYEELEELDEREKNWFETNAPAAESGSGGEVAVVAPSAAAGAPAAQHCALCGDLFL
QFYNEDREEWHLRNAVRHNDQHYHPLCLADYKASLAKEEPEEMSEKADGEVEKTEPIEVD
TEEVKLASDDESDVEVLEVKEPVVEALEIEEASCSESEDDDVVLKTEPVEQVVLEDADTD
DETSEARRQRDIAAADFANVRVKQEPIDPDDEPVITVDEDRLPTTIETTHTTVTSSIDGN
VQLETPTAVIPIGGIRINITKTIPAAVTQEPSLEEISADDEPLPPGEEPELEYKLKPNLE
GIQFSRQPPVNKGNELSGLCSIM
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggaaatcgcagaggagtacgcatccagcctggcagatcttactgtcaacagc
aaacctcttataaatatgctaacaatattagcagaagagaacatcgaccatgccggggtt
atcgttgataccgtggagaaacatttggagaaggtacatccagacatcaagctgcctgtt
ctgtatttagttgattctatcatcaagaatgttggtggagcatacactcagaagttttca
cagagcatcgtaaatatgttcacaaggacattcaaacaggttgatgaaaaagtaaggtct
cagatgttcaaactgcgggagacatggcacgatgtgttccccgccacaaagctgtatcag
ttggatgtgaaagtgaacctgattgatccggcgtggcctatccaagcgcagccgcaacaa
tctaacatccatgtaaatccaaattttctgaaaaagaatactgccgctgcaccaacgacc
agcgctgcagcaaccctgacagaagacgaagagaagatgcgcaccatactcgctaagaag
gaacaagagctgctcatgctgcaaagaaagaagattgaaatggagctagagaaaactcgg
cgtcagctcgagttggcagagaaaaatgctaaaatggtgggtccgagcaatgtgtcagcg
atgccaatagcggtagtgaaccccgcacccgcacccaacactgcaaccacagcaacaccc
gcaccaacagtctcggtcaaacagcggttgggaccgccagtaaacaagccggcgggagga
cgcattgcgcccgtcagcggagccctcgtcactgcgcgtcgcgaccctcggctcgcacgt
cgccctccgcccccgcagaccgcgccagtcgtgccccccgtgccccacgtgccccacgta
cctcatgtacctctagtgcctcacgtgcccctcgcctccaacggccctcccatagcgccc
aacgtgttcgacataaagcccctcgaaagggtcaccaagcgcaagaacgtcatcaccatc
gacgtgcgtctcgacgctgccaaagacccgcgtcgtcgagaccctcggctgtcggaccgc
gccagagagagacgcgccaagaagaccgacgaggagcgggagagaaagcgcgaggagctc
cgccaggagaaagacaaggcgagagataacgccgcctacagcatccgcaccgcagtcgac
gactacatcgatcgtctgcaaatatccgatccgaaaaagatcaacaagctcccacctatc
cctaaaataaacagggacgaaaataaagacgatgaacccgcacccaccaaaaagagaaag
gagaatcctaaagagagacggaagaagaaggaacagaactctagcaaagatagttcgagc
agctcctcgccggagaagcgacagaaatccaaagatacgagaaagaaacctaaagcgaag
ctggaggtggaggagacgcctcctgctgtagcggaaactgtcacatttaaagtgctaaag
aatttcaacaaagacaactatatgtgccggaataaaaagaaatctgagagtccggagcga
gatacagaagaaaagcctgaagacaagaaatctaatagtgaaccaacaaatgtactcgac
gttgtcatggagactaaggacgttgaccttagggtcctgcagccggtgctggaggccagc
gccgctgcggtcgcgcagaagagaccgtccacagaaactattgaaggaaagcccaagaag
aataaacttgataaatttgatatcttatttggcaatgaagatgtggatcttcgtcaatta
ccacaagtagacgaattggtgcctcccccaccgcccaccataaccgagtcccctaaagtc
gacgtttccctcgacgacgccgaggatgacggtctgatctccaccagctcacccaaacag
aaagactggcacgaggtcaaggagaagaaagacgatacaaagaaaaccccctcaaaactg
gacctcgtcagagcgaagctcgctgaggccacgaaaggaaaagaccgattaggtcgaccc
ttacttttcagtaaatcgcctagtattgagagggagaggcggcgcacgctcagctccgac
gatggggaccacaagtctgacagcggggacgatttcacgcccgaagaccacaagaagacc
atatcgattatcatgtcacaggcgaaggaacagttcagcgacggcaaactggacaagaat
cagtacaacactctgatgtaccaagtgctgcagctcaacgagaagctcaagctgaaagag
gccaaacagagggagtcgctcgagctgtccaagcggaagctgaaagcacacattgacgaa
gaaaaccacaaggtcgccagtcccaagacctcgccgtcggatatgaacaacttcggcgac
atagacgagagagtcgccccctccgcgtacctcgacaccccgcccgatagccagaattac
atgcaggattccgacatgagaaagaacccgattgggcccgacgcggcggacggcaaggca
cagggtctgctgcccctgcctcccatgatgcccatgtacatgggccccttccccatgtgg
cggggacagccgagaccgcgcatggaagaattcggaccccgaagatttagaggtccgatg
ccaccgttctttagaggcaagttcgataagagggcgccgccgaggctaccttttgaccct
cgcctgccgctgccgctgcctacgcccaagctgggcatgtgccagggcgatagcccactg
ctgccctacgaacgagcggagtcgccgccacctatcggcacgcccggacacaccatcccg
cctactaacctccaaatcctcgagtacatcgaccaagatcccgtcaaaactattcagatt
gacggagttccccgagagatcagattctacggagaaaccgcagtcattatgttggactgg
gacgacccgcgcgagatcaagttcctgccgggctgcaggagggtgacgttcgacaacaag
gactcggtgatcctaaacttcaacgagggttacaaacaagtggaaattgacgatcaagtg
ttcgacattagattcggtgctcctacaagagagctgtacatcaacgggaggtggtacgag
tgcttcttcggcggacagccgctgggcgtgctcatagacggcaagccgagactgttgcac
ttggagggaccgcttccacaagtcgatatcggtaaaacgaagcggaccgatctcgtggct
ggaaaaataaacctgattataaacgcgacacagatgtgccccgtgtacctggacgctaaa
gtgcaaaagattatgataaacggtcaattcttcacgctgcgtttcgtggatgccctcagg
accgttctgatcaatgagaaacctttcaaggtcgagttcggagatctaccgaggccaata
tttatcgggaaggagaagttctttgtcagattctccgccctgccgcgtcacatcaagccg
gggcagattgagatcgccgacatggagggcgtgtcggtgcccgccagcctgcccgcgccg
gcgcccgacagcccgaccaaaatcgaaaaagatcctgaggaagcagacgaggaaccgata
gccaggcctaaaaaatcaccgagtcccgacggcgagaaccaaggtctggacatgttggca
agtttaatgccatccagcatggcaccagcgtcagggtcagagtacagcgtggccgagccg
atgttcagcaagactgacaagatcccgggcctggagactcctgctgaagagaaaccggcc
ccggcgaccatacttggcaatatcaatattaacgatctattcgccaagctagtcgctacc
ggaattgtacaagttcctaaagatagtaaagaagatattaaaactgatgaaattatacca
aaacaagataagaatatcatacgtcaagtggatctacttaaacctgaaactttaaagatc
aagcagccggcgctggtgtcgcggctgtacggcggcatgcagtgcagcgggtgcggggct
cgcttcccgccagagcacacagtgagatactcgcagcatctcgactggcacttcagacag
aaccgccgcgagagagactccgcgcgtcgggcgcactctcgcacctggcactacgacctg
ccagactggctgcgatacgaggagctggaggaactcgacgagagagaaaagaactggttc
gagacgaacgcgccggcagctgagagcgggtccggtggtgaggtggcggtggtagccccg
agtgcggccgccggagcacccgccgcgcagcactgcgccctctgcggagatctcttcctg
cagttctacaacgaggaccgcgaggagtggcatctcaggaacgcagtgcgccataatgac
caacattaccacccgctctgtctggctgactataaagcgtctctggctaaagaagagcca
gaagaaatgtcagaaaaggccgatggtgaggtggagaagacggagccgatagaggtagac
acggaggaggtgaagttggcctctgacgacgagtccgacgtcgaggtccttgaggttaag
gaacccgttgttgaggctctagagatagaagaagcttcgtgctctgagtccgaggacgac
gacgtggtgctgaagacggagccggtggagcaggtggtgctggaggacgcggacacggat
gatgagaccagcgaggctcggcgtcagcgggacatcgccgctgctgactttgccaacgtg
cgcgtcaaacaggaacctattgaccccgatgatgaaccagtaataacagtggacgaggat
cgtcttcccactaccatagagacaacgcataccacagtcacatcttctattgacggcaat
gtgcaattggagacaccaacagctgtcatacccatcggaggcatcagaattaacataact
aaaacaataccagccgctgtcactcaggagccgtccctggaggaaatcagtgctgatgat
gagcccctacctccaggtgaagaaccggagcttgagtacaagttgaaacctaacttagaa
ggtatacagttcagtagacaaccacctgttaacaaaggtaatgaattatcaggactttgt
tctattatgtga
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integrated database retrieval system
