KEGG   Papilio machaon (common yellow swallowtail): 106716423
Entry
106716423         CDS       T05138                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pmac  Papilio machaon (common yellow swallowtail)
Pathway
pmac03030  DNA replication
pmac03410  Base excision repair
pmac03420  Nucleotide excision repair
pmac03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106716423
   03410 Base excision repair
    106716423
   03420 Nucleotide excision repair
    106716423
   03430 Mismatch repair
    106716423
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmac03032]
    106716423
   03400 DNA repair and recombination proteins [BR:pmac03400]
    106716423
Enzymes [BR:pmac01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106716423
    6.5.1.6  DNA ligase (ATP or NAD+)
     106716423
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106716423
DNA replication proteins [BR:pmac03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    106716423
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     106716423
DNA repair and recombination proteins [BR:pmac03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106716423
   NER (nucleotide excision repair)
    Other NER factors
     106716423
   MMR (mismatch excision repair)
    Other MMR factors
     106716423
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C FERM_N_2
Other DBs
NCBI-GeneID: 106716423
NCBI-ProteinID: XP_014365428
LinkDB
Position
Unknown
AA seq 959 aa
MNISKLSRLSRIANYVVNRHHTLLHTVVVKSWNVDTRRMSQKSITSFFKITPKKESDGIV
NHQKEDKSSEDKSLTEETSPPATATKRSSKRLRSDSVEKELPSASRSPSPVTSAKKKTVK
RQRIESSGSEADLPKGSDEATIPVKLERNDSPKTYSSPKTKRNKSKLTKTNQESVKNIEK
NESFNGYESSNESNSPKENKSPKQSKSPKSVKTPKKQKSPKEQSVSPNEIPKIKTEKKSP
SPVKSVTKTKGPMEKFMESNNMMRSFVKSEKIVSTQDDEKDVKHTNEANDTIQHTLVPEA
EYNPGKTKYHPIKDACWTSGQPVPYLALARTLEAVEATSARHKMVDLLSNYFRSVIALTP
QDLLPSIYLCLNQLGPAYLGLELGIAETYLMKAVGGCTGRSLAQVRAAAQRLGELGAAAQ
QARAAQRMLCAPAPLQVRKLHAALKDLAAITGQASVNKKISKIQALFVACRHSEAKYLIR
SLEGKLRVGLAEQSLLQALALATARTPPAGPHAGCLDVAEGMSSDDFKAVVDEHALVIKT
TYCECPNYELVVPALLQHGARELPRHCRLTPGIPLKPMLAHPARGVHEIFSRFENEKFTC
EWKYDGERAQIHVPGEEAPRLAHARIFSRNQEDNTTKYPDVLARLPALLKSTVTSCVLDC
EAVAYDTVNKQILPFQVLSTRKRKDASAAEVRVQVCVFVFDLLLLNGRSLCREPLAERRR
LLHDHFAESAGEWEFARAQDCSGAEEVQQFLEQSVRGSCEGLMVKALHGERAHYDIARRS
RNWLKLKKDYLEGGGDSIDAVVIGAYRGRGRRAGRFGGFLLACYDPAGEQYQSLCKIGTG
FSDQDLDTFTEQLQQHVIDAPRNYYSYEASQAPDVWLAAACVWEVRCADLSLSPAHRAAL
GLIDRDKGVSLRFPRFVRVREDKRAEEATSGEQIARMYLAQDSVRNQHTAHKMDDDDFY
NT seq 2880 nt   +upstreamnt  +downstreamnt
atgaacatatctaagttatctcgattaagtagaatagctaattacgtcgtgaaccggcac
catacgttattgcatactgttgttgttaaatcgtggaatgtcgacacacgaagaatgtct
caaaaaagcataacttctttttttaaaataacccccaagaaggagtctgatggtattgtt
aaccatcagaaggaggacaagtcaagtgaggacaaaagtttgactgaagaaacatcaccg
cctgcaactgctacaaagcgatcatcaaagagattgagatcagacagtgttgagaaagag
cttccgtctgcgtccaggtctccctcccccgtcacctctgcaaagaaaaagacagtgaaa
aggcagagaattgagagctcgggaagtgaagcggatctaccaaaaggttcagacgaggca
acaatacctgttaaattagaaaggaatgattcaccaaaaacttattcctcaccgaaaact
aaacgcaataaatcaaaactaacaaaaaccaatcaggaaagtgttaaaaatattgagaaa
aatgagagttttaatggatatgagagttcaaatgagagtaacagccctaaagaaaacaaa
agtcctaaacaaagtaaaagtccaaaatcagttaaaactcctaaaaaacagaaaagccca
aaggaacaatcagtgagtccgaatgagataccaaaaattaagactgaaaagaaatcaccg
tcaccagtaaaaagtgtaacaaaaacaaaaggtccaatggaaaagttcatggaaagtaat
aacatgatgcggtcttttgtaaagagtgaaaagattgtaagcacacaggatgatgaaaaa
gatgttaaacatacaaatgaagcaaatgacacaatacaacatacattagttccagaagcg
gaatacaatccgggcaagactaagtatcacccaatcaaggacgcttgctggacttcgggc
cagccggtgccgtacctggccctcgcccgcacactggaggctgtggaggcgacctcggcg
cgacacaagatggtcgacctcctcagcaactacttccgctccgtcatcgcgctcactccg
caagatctgctgcccagcatctacctctgtctcaaccagctcggccccgcctatctagga
ctggagctaggcatagcggagacgtacctgatgaaggcggtgggggggtgcacggggcgg
tcgctggcgcaggtgcgtgcggcggcgcagcggctgggcgagctgggcgcggcggcgcag
caagcccgcgcggcgcagcgcatgctgtgtgcaccggcgccgctgcaggtgcgcaagctg
cacgccgcactcaaggacctcgccgccatcaccggacaggcgtccgtcaacaagaagatc
agcaagatccaggctctgttcgtggcgtgtcggcactccgaggccaagtacttgataagg
tcgctggagggcaagctgcgcgtgggcctggcggagcagtcgctgctgcaggcgctggcg
ctggccacggcccgcaccccgcccgcgggaccgcacgccggctgcctcgacgtcgccgag
gggatgtcatccgacgacttcaaggcggtggtggatgagcacgcgctggtgataaagacg
acgtactgcgagtgccccaactacgagctggtggtgccggcgctgctgcagcacggcgcc
cgggagctgccccggcactgccgcctcacgcccggcataccgctcaagcccatgttggcg
catcccgcgcgcggcgtgcacgagatattctcgcgcttcgagaatgagaagttcacttgc
gagtggaagtacgacggcgagcgcgcgcagatccacgtgcccggggaggaggcgccgcga
ctcgcacacgcgcgcatcttcagccgcaaccaggaggacaacaccaccaagtacccggac
gtgctggcgcggctgccggcgctgctcaagtccaccgtcaccagctgcgtactggactgc
gaggccgtcgcctacgacaccgtcaacaagcaaattctgcccttccaggtgctgtcgacg
cgcaagcgcaaggacgcgagcgcggcggaggtgcgcgtgcaggtctgcgtgttcgtgttc
gacctgctgctgctgaacggccgctcgctctgtcgggagccgttggcggagcgccggcgg
ctgctgcacgaccacttcgccgagagcgccggcgagtgggagtttgctcgcgcgcaggac
tgcagcggcgcagaggaggtgcaacagttcctcgagcagtcggtgcgcggctcctgcgag
gggctgatggtgaaggcgctgcacggcgagcgcgcgcactacgacatcgcgcgccgctct
cgcaactggctcaagctgaagaaggactacctggagggcggcggggacagcatcgatgcg
gtagtgataggcgcgtaccgcgggcgagggcggcgcgccgggcgcttcggcggcttcctg
ctggcgtgctacgaccccgccggggagcagtaccagtcgctctgcaagatcggcaccggc
ttctccgaccaggacctcgacaccttcaccgagcagctgcagcaacacgtcatcgacgcg
cccagaaactactacagttacgaggcgtcgcaggctccggacgtgtggctggcggcggcc
tgcgtgtgggaggtgcgctgcgcggacctgtctctgtcgccggcacaccgcgccgcgctc
ggcctcatcgaccgggacaagggcgtctcgctgcgcttccccaggttcgtgcgcgtgcgc
gaggacaagcgcgcggaggaggcgacgagcggggagcagatcgcgcgcatgtacctggcg
caggactcagtgcgcaaccagcacaccgcgcacaagatggacgacgacgacttctactga

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