Prauserella marina: BAY61_28605
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Entry
BAY61_28605 CDS
T04988
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmad
Prauserella marina
Pathway
pmad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAY61_28605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmad03400
]
BAY61_28605
Enzymes [BR:
pmad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BAY61_28605
DNA repair and recombination proteins [BR:
pmad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAY61_28605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASR38310
UniProt:
A0A222VWP4
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All DBs
Position
6209530..6210984
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AA seq
484 aa
AA seq
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MERKLDEYRRKRRADRTPEPFPGSEAVEPRGADDTYVIHEHHARQLHWDVRLERGGVLVS
WAVPKGLPPAPGTVRLAVRTEDHPMEYATFSGEIPKGEYGAGSMTIWDSGRYETLKWSDR
EVSVVFHGERVSGKYVFFRSGEEWQVIRSDPASDPDWAALPERVEPMLAVSGSLPAAERD
DDWAYEFKWDGVRALARIEGGRLGLFARSGNDITATYPELRGVGEQLGSTQAWLDGEIVA
LHGGRPSFKALQARMHAGEQRAKQLAKHQPVTYLIFDLLHLEGHACTVLPYERRRELLEK
LELGGSNWQLSPSFTGEGAAVVAAAGEQQLEGVIAKRLASTYQQGQRSADWLKITELRTL
DVIVGGWRPGEGKRAGTFGSLMLGAPSAEGLRYVGQVGTGFTEGMLRDLLATLSRSEQDS
SPFGNEVPKERAKGARWVAPTLVAEVVFKDWTEEGRLRAPAWRGLRPDLDPAEVPHWEDR
GDHT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcaagctcgacgaataccggcgaaaacgacgtgcggaccgcacgccggaaccg
ttccccggctccgaggcggtcgagccacgcggcgccgacgacacgtacgtgatccacgag
catcacgcacgccaactgcactgggacgtgaggctggaacgaggcggagtgctcgtgtcg
tgggccgtgccgaagggcctcccgcctgcgcccggcaccgtccggctcgccgtgcgcacc
gaggaccacccgatggagtacgccaccttctcgggtgagatccccaagggcgagtacggc
gcgggaagcatgaccatctgggacagcggacggtacgaaacgctcaagtggtccgatcgc
gaggtgtcggtcgtgttccacggcgaacgggtgagcggcaagtacgtgttcttccgcagt
ggcgaggagtggcaggtgatccgctcggacccggcaagcgatccggattgggcggccctg
cccgaacgcgtcgaacccatgctcgcggtcagcggatcactgcccgctgccgaacgggac
gacgactgggcctacgagttcaaatgggacggggtcagggcgctcgccagaatcgagggc
ggcaggctcggcctcttcgcgcgaagcggcaacgacatcacggcgacctatcccgaactg
cgcggggtcggtgaacaactcggcagcacacaggcttggctcgacggcgagatcgtcgcg
ctgcacgggggaaggcccagcttcaaggcactccaggcgaggatgcacgcgggagaacag
cgagccaaacagctcgccaaacaccagcccgtcacctacctgatcttcgacctgctgcac
ctcgaagggcacgcgtgcacggtgcttccctacgagcgacggagggaactgctggaaaaa
ctcgaactgggaggatccaactggcagctttcgccgagcttcaccggcgagggcgcggcc
gtcgtcgcggcggcaggggaacaacaactggagggcgtcatcgcgaaacgtctcgcttcg
acgtatcaacaggggcaacgctccgccgattggctcaagatcaccgaactgcggacgctc
gacgtcatcgtcggcggctggcggccaggtgaaggcaagcgggccggtacgttcggctcg
ctgatgctcggggcgccctccgccgaaggtcttcgctacgtcggccaggtcggaaccggg
ttcaccgagggaatgcttcgcgatctgctcgccaccctcagccggtccgaacaggacagt
tccccgttcggcaacgaagtaccgaaagagcgggccaagggcgcgaggtgggtcgcgccc
acgctggtcgccgaggtcgtcttcaaggattggacggaggagggaaggctgcgggctccg
gcttggcgcggcctgcgacccgacctcgaccccgccgaggttccccattgggaagatcgt
ggtgaccacacatga
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