Paenibacillus marchantiae: PTQ21_11660
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Entry
PTQ21_11660 CDS
T08974
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PTQ21_11660 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmah03400
]
PTQ21_11660 (ligD)
Enzymes [BR:
pmah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PTQ21_11660 (ligD)
DNA repair and recombination proteins [BR:
pmah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PTQ21_11660 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WDQ34859
LinkDB
All DBs
Position
complement(2585067..2585957)
Genome browser
AA seq
296 aa
AA seq
DB search
MAHTIKGTITINGMELTVTNPDKLLWPEAGVTKAIYLQKLAALAPYLLTYTRNRLLTTIR
YPHGAGGEFFYQKNAPEPVPEFVRTEMHDGIRYVVMNDLPDLLWLGNLAALEFHPSLHAV
GNHLPCEWMIDLDPSQEEEPRIMQAALIVGETLTSLGLRSVPKTSGATGVQIIVPIRQGV
TFDELRDIGYFVGKYVTQKHPDLFTLERLKKDRGDRIYFDYLQHYGGKTLAAPYTPRAKP
GGTVSTPLTWDEVRNNVSIKDYHLMNIVERLTKTGDLIAAVEPQPVELIIQHLKQK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccatacaataaagggcaccataacgattaatggaatggaacttactgtgactaat
ccagacaagttgttatggcccgaagcaggtgtaaccaaggctatctatttgcaaaagttg
gcggcactggctccctacctacttacttacacccgtaatcggctgctcaccacgatacgt
tatccgcatggtgcaggcggcgagtttttctatcagaaaaatgccccagagccagttccg
gagtttgtgcgaaccgagatgcatgacgggatacgatatgtggtgatgaacgacctccct
gatctgttatggcttggcaatctggccgctctggagtttcatccttccttgcatgccgta
ggcaaccatctgccttgcgagtggatgattgatctcgatccttcgcaggaagaagaacct
cgcattatgcaggcggccttaatcgtgggggaaacgctaacttcgcttggtttgagatcg
gtaccgaaaacatccggtgccacaggtgtacagattattgttccgatccgccaaggtgta
accttcgatgaattaagagacatcggttattttgtaggcaaatacgtcactcaaaaacat
ccggatctatttacactggaacgactaaaaaaagatcggggggatcgcatttattttgat
tacctccagcattacggtggcaaaacactcgcagctccttacactccccgcgccaagcca
ggcggcactgtgtctactccactcacatgggatgaagtgcggaacaacgtttcgatcaag
gattaccacttgatgaacatcgtggagcgcctgacgaagaccggggatctgatcgcagct
gtcgaacctcagcctgttgaactgatcatccagcatttaaaacaaaaatag
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