Parus major (Great Tit): 107201901
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Entry
107201901 CDS
T04864
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04510
Focal adhesion
pmaj04512
ECM-receptor interaction
pmaj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107201901 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107201901 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107201901 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmaj04147
]
107201901 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107201901 (COL4A2)
Exosome [BR:
pmaj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107201901 (COL4A2)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107201901 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107201901
NCBI-ProteinID:
XP_015477381
Ensembl:
ENSPMJG00000011565
LinkDB
All DBs
Position
1:23990873..24128001
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARFFLCQDTGLLLILMEVVLSAVKVHAGGKKYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGITGPKGEVGQRGVTGFPGADG
IPGHPGQPGPRGKPGHDGCNGTAGDPGDSGTPGLSGFPGSIGVQGPKGQKGEPYIVAPEI
ISRHRGDPGDSGFIGFPGPPGTLGIQGPVGPRGQRGRPGPPGPPGPPGPQGNRGLGFYGE
KGEQGAPGPPGPPGLPTRELMGVPSDKHKGERGDPGPRGEAGIPGILLFPLEKGEEGVMG
YPGQRGLPGINGFPGLSGERGFPGFDGPPGGHGPRGSKGEPGEMGPPGPDSYFPSRIPRK
GARGDPGFPGVSGLPGDRGEEGDRGLPGDPGFSDGDGDKPGLPGEMGPKGEKGEIGSPAY
VAGPPGLPGKDGSPGLRGPPGPVGAPGPLFGLKGREGAPGRFGLQGFPGPRGQKGPKGEE
GDCTRCLLGEELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGLPGYPGAKGFSGPAG
FPGRKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGLPGRDGLDGLPGQPGLPGDAVRGF
PGDPGYPGELGPKGFPGEAGLPGEGFPGPKGFQGPPGDQGQAGNPGPPGLPGLPGEPGQL
DCGQVTEDFPRGDATEPIWSGAGCVRPPKGSQGKPGVPGATGAKGARGFPGDPGPMGFPG
LNGTRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAPGPKGLPGDVF
GAAAGSRGDVGLPGFPGLKGAPGDQGVPGARGADGSPGLPGSKGEPGPQGLPGLMGLPGT
PGTHGFPGPPGNRGPAGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGDMGHTGL
PGIRGVTGPPGISGMDGFPGDKGLRGSPGIDGFKGMTGLKGRPGIKGIKGEFGPLGARGD
KGSQGARGFKGDRGDQGPPGEPPKLMPSMMMEVKGEKGDVGERGTKGFFGLKGSKGMPGL
PGRTGTPGSPGHPSYVAGVKGDIGAKGLTGVKGYPGPTGSPGIRGFPGTTGVRGEKGVPG
ISGHFGTPGSHGEIGDRGETINLPGMPGLKGEVGVPGLTGIRGGVGPKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGPPGQQGSPGTPGFPGEKGTPGWPGLPGRAGQPGLRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGALGDKGEAGEPSRVEGSRGPPGQKGDRGVPGVP
GPFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGIPAPPGSKGESGQA
GRTGEIGPKGSRGDPGLAGGPGLPGFPGPKGPRGEQGVIGFMGTVGFPGDLGPIGPKGDR
GVTGFQGPPGPPGPPPHPPRLVAEQGSPGPRGNIGPQGSPGDMGPPGPPGDPGFRGSPGQ
PGLQGRGGIPAPPGSRGEQGGMGFQGPVGFEGQPGRPGSPGPAGMPGRSVSMGYLLVKHS
QSDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEDIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSGDTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacatctctcagcttcccagtgcacgttttttcctttgtcaggatacggggcttttg
ctgatcctgatggaagttgtgctgtcggccgtcaaagtgcatgctggtggaaagaaatac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggactccttggatcacagggattcactggaccaccaggattgatg
gggatcccaggagtgcaaggtcccaaaggtcacaaaggtgaaagaggatacccaggaata
actggacccaaaggagaagtgggacaaagaggagtcactggattccccggggcagatggc
attcctggtcatccaggccagccaggaccaagggggaaaccaggtcatgatggctgtaat
gggacagcaggtgaccctggtgactcgggaactcctggactctccggtttccctggtagc
attggagtccaagggcccaagggccagaagggagagccgtacatagtagcgccggagatc
atcagccgacacaggggagatcctggggattcagggttcattggttttccaggaccgcca
ggtacactgggtattcagggacctgttggtccaagaggacagcgaggaagaccaggacca
ccaggacccccagggcccccaggaccacaaggcaacaggggccttggcttctatggagaa
aaaggtgaacagggcgccccaggtcctccaggtccacctgggcttcctacaagagaactg
atgggtgtcccctctgacaaacacaagggtgaaagaggagaccctggaccaagaggggaa
gctggaattccaggcatacttctctttcctcttgaaaaaggtgaagaaggggtaatgggc
tacccaggacaaaggggactgcctggcatcaatggctttccaggactcagtggagaaaga
ggttttccaggatttgatggtccacccggtggccatggtcccagaggaagcaagggggag
cctggtgagatgggtcctccagggccagattcctattttccttcccgcatcccaaggaaa
ggtgcaagaggtgatccaggctttccaggtgtttctggactcccaggagaccgaggagag
gagggagatcgtggattgcctggtgatcctggattttctgatggggatggggataagcca
ggcttacctggagaaatgggaccaaaaggtgaaaagggtgaaataggatctcctgcttat
gttgcgggaccacctgggcttccgggtaaggatggctcaccaggacttcgtggtccccct
ggtcccgttggagcccctggtcctctctttggattaaaaggacgagagggagcaccaggt
agatttggtctacaaggtttccctgggccaagaggacaaaaaggacctaaaggtgaagaa
ggggattgcactagatgtcttttgggtgaggaactcagaaggggctctactggcccccgt
ggccctcctggctttccaggaacccctggccagcctggaaggaaaggagaacctggtgat
caaggaccacatggtcttcctggctaccctggagcaaaaggattttcgggtccagctgga
tttcctggacggaaaggagaaaagggagactctttacacataaccacgaaaggcaccaaa
ggaatccgaggagatcccgggctgcctggaatcagaggtgaagatggtttaccaggcaga
gacgggttggatggtttaccaggacagcctggccttccgggtgatgctgtcagaggcttc
cccggtgatcctggttatccaggtgaattaggcccaaagggctttccaggagaagcaggc
ctgccaggtgaaggatttcctggtccaaaagggttccagggtcctccaggtgaccaagga
caagctggaaacccaggacctccaggtctgcctggtctgccaggagagcctggccaacta
gattgtggccaggtcactgaagactttcctagaggagatgcaaccgagccaatatggtca
ggtgcaggctgtgttaggccaccaaaaggatcccaaggaaagccaggagtgccaggagcc
acaggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggtttcccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttact
ggacccaggggagacagaggcccaaatggtctacctggactgcagggacacccaggcctt
acaggaaaatctggggctccgggagcaccaggaccgaagggccttcctggtgacgttttt
ggagcagcagcaggttcccgaggggatgtcggcctccccggcttcccagggttgaaaggt
gcaccaggagatcaaggagtaccaggagctagaggagcggatggtagccctggtttgcca
ggatccaaaggagagccagggccacaaggtctccctggtttgatgggattaccaggaaca
ccaggaacacatggattcccaggtccaccaggaaaccgtgggccagccggtgggcctggt
tctcaaggacctcttggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccctgtgggcctgaagggtctgtctggtgacaaaggtgacatgggtcacacgggatta
cccggtatacgtggtgtgactgggccccctggcataagtggaatggatggctttccagga
gataaaggcttgagaggttcacctggcattgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggaatcaaaggagaatttggcccacttggggctcgaggagat
aaaggctcacagggtgcacgtggtttcaaaggtgaccgtggagatcaaggccccccagga
gaacctccaaagctcatgcccagcatgatgatggaagttaaaggtgaaaaaggagatgtt
ggagaaaggggcacaaagggattctttggcttaaaaggtagcaagggaatgccaggcctt
cctggaaggacaggaaccccaggctcccctgggcatcccagctatgtggctggtgtgaaa
ggagacatcggtgcgaaagggctgacaggcgtgaaagggtatcctggtcccactggttct
cctggcatcagaggcttccctggcaccacaggagtcagaggagaaaagggtgttccagga
atttcaggtcattttggtactcctggctcacatggagaaataggtgatcggggagagact
ataaacttaccaggaatgccaggccttaaaggagaagttggtgtgccaggcttaacaggc
ataagaggaggtgtgggaccaaaaggagaaggtggtgatcctggtttccctggcattgaa
ggtctcaagggcacacagggtgtccctggctctgtgggacaggaaggtttgccaggactg
gttggccccccagggcaacaaggaagccctgggacacctggatttccaggtgaaaaggga
actcccggctggccaggcttaccaggacgagcaggccagcctggcttaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatgggtac
ggctctgcaggtttcccaggtgcactgggtgacaaaggagaagcgggagagccaagcaga
gtagaaggcagccgaggacctccgggacagaagggagacagaggtgttccaggagtccca
ggaccctttggtattcctgggcaggaaggatttccagggcctcctgggatttcaaatata
tcaggatatcctggtgataaaggctccccaggtctagatggagttccaggctatccagga
ccacaggggcagcctggaatacctgctccaccaggaagcaaaggagaaagtggacaagca
ggtaggactggagaaattggcccaaaaggaagcagaggtgaccctggattagcaggagga
cctggcctacctggattccctggaccaaaaggtcctaggggtgaacaaggtgtcattggc
tttatgggcacagtaggatttccaggtgatctgggacccatcggacccaagggagataga
ggagtaactggcttccagggacctccaggccctcctgggccaccccctcatcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtgggaatataggacctcagggaagccca
ggagatatgggacctccaggcccaccaggagatccaggtttcagaggctcacctggacag
cccggactccaaggcaggggtggcattccagctcctcctggctccagaggagaacaagga
ggaatgggatttcagggtccggtgggatttgaaggtcagccgggccgccccggtagccct
gggccagcaggcatgccaggccgcagtgtcagcatgggctacctgctggtgaagcacagc
cagtccgaccaagagccaatgtgcccagttggcatgaacaaactctggagtggatacagc
ctactgtattttgaaggacaagagaaagcacacaaccaggatctagggctggctggctcg
tgtttgtcccgttttagcaccatgccattcctctactgtaaccctggggacatttgttat
tatgcaagtcgaaatgataaatcctactggctctcaaccacagcacctctcccaatgatg
cccgtggcagaagaagacattaagccgtatatcagtcgctgctccgtttgtgaggcccca
gctgtggcaattgctgtccacagccaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggatcggatattccttcctcatgcacactgctgctggtgatgaaggtgga
ggacagtcgctggtttctcctgggagctgcctggaagatttcagggcgactcctttcatc
gaatgcaacggcgcacgcggaacctgtcactactttgcaaacaaatacagcttctggctc
accacgatcgaccagcccttccagagcaagccctcgggagacacactcaaggcaggactc
atccgaagccacatcagcagatgtcaagtctgtatgaaaaacttatag
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integrated database retrieval system
