Parus major (Great Tit): 107205476
Help
Entry
107205476 CDS
T04864
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmaj03000
]
107205476 (SOX6)
Transcription factors [BR:
pmaj03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
107205476 (SOX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
107205476
NCBI-ProteinID:
XP_015485337
Ensembl:
ENSPMJG00000008569
LinkDB
All DBs
Position
5:complement(12363712..12732353)
Genome browser
AA seq
821 aa
AA seq
DB search
MLLHSPRSGKFGGTKRDVTTLVLGHLAHQRRMSSKQATSPFACAADGEETMTQDLASRDK
EEGNSDQHAASHLPLHNVMHNKPHSEELPTLVTTIQQDPEWDGVISAQHRMESESNKLCS
LYSFRNTSTSPNKPDEGGRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQ
EDSSCMEKLLSKDWKEKMEKLNTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLA
AHDEQKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPP
LMIPIFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQ
QLYAAQLASMQVSPGAKMPSTPQPPNTTGALSPTGMKNEKRGTSPVTQVKDEAAQPLNLS
ARPKTAEPVKSPTSPTQNLFPASKSSPVTVSNKSGIPSPLSGSLGRGSSLDILSSLNSPA
LFGDQDTVMKAIQEARKMREQIQREQQQQQQPHGVDGKLPSMNNMGLNNCRNEKERTRFE
NLGPQLAGKPNEDGKIGPGVIDLTRPEDAEGSKAVNGSAAKLQQYYCWPTGGATVAEARV
YRDSRGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEK
QPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTV
GQQPQIPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKTDSG
SLPGNEMINGEDEIEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgcacagcccaagaagtggaaagtttggggggacaaagagagatgttaccacg
cttgttcttggccaccttgcccatcaaagaagaatgtcttccaagcaggctacctctcca
tttgcatgtgcagctgatggagaggaaacaatgacccaggacttagcatcacgagacaag
gaagagggaaacagtgatcagcatgcggcctctcatctgcctctacacaatgtaatgcac
aacaaacctcactctgaggagctaccgactctggtcaccaccatccaacaggatcccgag
tgggatggagtaatctcagcccaacacagaatggagtcagagagtaataagttatgttcc
ctatattccttccgaaatacctctacctcaccaaacaagcccgacgaaggaggtcgtgac
cgcagcgagctaatgaccagtgttaattttggaacaccagagcgccgcaagggaagccta
gcagatgtggtggacacactgaaacagaagaaactagaagaaatgaccaggactgagcaa
gaagattcatcctgtatggaaaagctactttctaaagactggaaagagaagatggaaaaa
ttaaacacaagtgatctccttggagaaattaaaggtacaccagaaagcctggcagaaaaa
gagcgacagctctctactatgatcacccagctgatcagcttacgggagcagctcctggct
gcccatgatgagcagaaaaagctggcagcctcacaaatcgaaaaacaacggcagcaaatg
gaccttgctcgccaacagcaagaacagattgcaagacaacagcagcaacttctgcagcag
cagcacaaaatcaatctactgcagcagcaaattcagcaggttcagggtcacatgcctccg
ctcatgatcccaatttttccacacgaccagcggacactggcagcggctgctgcagcccag
cagggattcctcttccccccaggaataacttacaagccaggtgataactaccctgtgcag
ttcattccatcaacaatggcagctgctgctgcttctggactcagccctttacagctccag
caactgtatgcagctcagctggcaagcatgcaagtttctcctggagccaaaatgccatct
actccacagccaccaaatacaacaggggcactttcacccactgggatgaaaaatgagaag
agagggaccagcccggtaactcaagttaaggatgaagcagctcagccactgaatctctca
gcccgacccaaaacagctgaacctgtcaaatccccaacatctccaacacagaatctcttc
ccagccagcaaaagcagtccagtgacggtgtcaaacaagagtggcatccccagcccgctc
agtgggtctctgggaagaggatcctctttagatatcctttccagtcttaattcacctgcc
ctatttggggaccaggatacagttatgaaagccattcaggaggctcgaaaaatgagagag
caaatccaaagggaacagcagcagcaacagcagcctcatggtgttgatggaaaattaccc
tccatgaataacatgggtctaaacaactgcaggaatgaaaaggaaagaacaaggtttgaa
aatttaggcccacagttagcagggaaacccaatgaagatggaaaaattggccctggtgtc
atcgatcttacaaggccagaagatgcagaagggagtaaagcagtgaatggctctgccgct
aaactacagcagtattattgttggccaacaggaggggccacggtggctgaagcccgggtc
taccgggactcacggggccgtgccagcagtgagccccacatcaagcggccaatgaacgcc
ttcatggtctgggccaaggatgagcgtcggaaaatcctccaggccttccccgacatgcac
aactccaacatcagcaaaatcctaggatctcgctggaagtccatgtcaaatcaagagaaa
caaccttattatgaagagcaggcacgactaagtaaaatccatctagaaaagtatcctaat
tacaaatacaagcctcgaccaaaacgtacctgcattgtggatgggaagaaactgcgtatt
ggtgaatataagcaactgatgaggtctcgaagacaggagatgaggcagttctttaccgta
ggacaacagcctcagattccaatcaccacgggaacaggagttgtctaccctggtgctatt
accatggcaaccaccacaccatcccctcagatgacatcagattgctccagcacctctgcc
agccctgagcccagcatccctgtcatccagagcacttatggtatgaagacggacagcgga
agccttcctggaaatgaaatgataaatggagaggatgaaatagaaatgtacgaggactat
gaggatgatcccaaatcagactatagtagtgaaaatgaagcccatgaggcagtcagtgcc
aactga
DBGET
integrated database retrieval system
