KEGG   Parus major (Great Tit): 107214056
Entry
107214056         CDS       T04864                                 
Symbol
KDM1A
Name
(RefSeq) lysine-specific histone demethylase 1A
  KO
K11450  [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
Organism
pmaj  Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pmaj03036]
    107214056 (KDM1A)
Enzymes [BR:pmaj01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.99  Miscellaneous
    1.14.99.66  [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
     107214056 (KDM1A)
Chromosome and associated proteins [BR:pmaj03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    BRAF-HDAC complex
     107214056 (KDM1A)
    REST complex
     107214056 (KDM1A)
   Histone demethylases
    107214056 (KDM1A)
SSDB
Motif
Pfam: Amino_oxidase SWIRM NAD_binding_8 DAO Pyr_redox_2 AlaDh_PNT_C Pyr_redox FAD_binding_2 HI0933_like FAD_binding_3 FAD_oxidored Thi4 Pyr_redox_3 2-Hacid_dh_C DUF6827 Sec10_N MurD-like_N GIDA Lycopene_cycl IlvN
Other DBs
NCBI-GeneID: 107214056
NCBI-ProteinID: XP_015504549
Ensembl: ENSPMJG00000006928
LinkDB
Position
23:4372885..4402960
AA seq 815 aa
SDSGGASERTPRKKEPPRASPPGGVSEPSAVGAAPAPGAETTGIAETPEGRRTSRRKRAK
VEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPPAPAEEENESEPEEPSGQAGG
LQDDSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLYIRNRT
LQLWLDNPKIQLTFEATIQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRVKPLPTKK
TGKVIIIGSGVSGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGL
GGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLD
FNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKDLLNKMVNLKEKIKE
LHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPS
DVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVA
LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAV
QFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNL
YKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWA
RGSYSYVAAGSSGNDYDLMAQPITPGPAIPGAPQPIPRLFFAGEHTIRNYPATVHGALLS
GLREAGRIADQFLGAMYTLPRQPTPGVPPQQAASL
NT seq 2448 nt   +upstreamnt  +downstreamnt
tcggatagcggcggggcttcggaacgcacgccccgcaagaaggagccgccgcgggcctcg
cctccgggcggtgtgtccgagccgtcggccgtcggggccgcccctgcgcccggcgccgaa
accaccggcatcgccgagacccccgagggccgcaggaccagccgccgcaagcgagccaaa
gtcgagtatagagagatggatgagagtcttgcaaacctgtcagaagatgagtattactct
gaagaagagagaaatgctaaagctgagaaagagaaaaaactacccccaccacctccacca
gctcctgcagaagaagagaatgaaagtgagccagaggagccgtctgggcaagcaggagga
cttcaagacgacagttctggagggtatggagacggccaagcatcaggtgtggagggtgca
gctttccagagtagacttccacatgaccgtatgacatctcaagaagctgcctgcttccct
gatataatcagtgggccacagcagactcagaaggtgtttctgtacatcaggaaccgcacc
ctgcagctctggttggataacccaaagattcagctgacatttgaagcaactatccaacag
ttagaagcaccttataatagtgacacagtgctcgttcacagggttcacagctacctggag
cgtcatgggctgattaactttgggatctacaaaagagtgaagccccttccaaccaagaag
acaggaaaggtgatcattattggttctggagtctctgggttggcagcagctcgccagttg
cagagttttggaatggatgtcacagttctggaagccagagacagagtaggaggacgagtt
gccacctttcgcaaagggaattatgttgctgatctgggagcaatggtggtaacaggactg
ggaggaaatcccatggctgtggtcagcaaacaagtaaatatggaactggcaaagatcaaa
caaaaatgtccactttatgaagcgaatggacaagctgttcccaaagagaaagatgaaatg
gtggagcaagaatttaatcgtctgctagaagccacatcctatctcagtcatcagctggat
tttaatgttctcaataataagcctgtctccctaggccaggctctggaggttgtcatacaa
ttgcaggagaagcatgtgaaggatgagcagattgagcactggaaaaaaattgtgaaaaca
caggaggaattgaaagatcttcttaacaagatggtgaatttaaaagagaagattaaagaa
cttcatcagcagtataaggaagcatcagaagtgaagccacctcgggatattacagcagag
ttccttgtgaaaagcaagcacagagatctgactgcactttgcaaggagtatgatgaattg
gcagaaacacaagggaagctggaagagaaattacaagaacttgaagccaatccaccaagt
gatgtttatttgtcatccagagacaggcaaatacttgactggcattttgcaaatctagaa
tttgctaatgctacacctctttctacactttcactgaagcactgggaccaggatgatgac
tttgaattcacaggcagtcacttgactgtgaggaatggatattcctgtgtgccagtggcc
ttagcagaagggttggatattaaattaaacacggcagttcgacaggttcgctacacagca
tcaggctgtgaagtgatagctgtaaatacccgatctaccagccagaccttcatttataag
tgtgatgctgtgctgtgcactctgcccctgggagtgctgaaacagcagcctccagcagtt
cagtttgtgccacctcttcctgaatggaaaacttctgcagtgcagaggatgggatttggc
aacctgaacaaggttgtgctgtgttttgatcgtgtcttctgggatccaagtgtcaatttg
tttggccatgttgggagcactactgcaagcagaggagagcttttcctcttttggaacctg
tacaaagcaccgattttgttggccttggtagcaggagaagcagcagggatcatggagaat
atcagtgatgatgtcattgttggtcggtgccttgccattctcaaaggcatctttggcagc
agcgctgtgccccagcctaaagagacggtggtgtcccgctggcgtgctgacccgtgggcc
cgggggtcctactcctacgtagctgctggatcctctggaaatgactatgatttgatggct
cagccaattactccagggccagccattccaggtgctccacagcccatccctcgcctgttc
ttcgcgggtgaacacaccatccgcaactaccccgccacggtgcacggcgcgctgctcagc
gggctgcgggaggccggccgcatcgccgaccagttcctgggggccatgtacaccctgccc
cggcagcccacgcccggtgtgcctccccagcaggctgccagcctgtga

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